Strain Fitness in Pseudomonas putida KT2440 around PP_3796

Experiment: 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3794 and PP_3795 are separated by 266 nucleotidesPP_3795 and PP_3796 are separated by 174 nucleotidesPP_3796 and PP_3797 are separated by 175 nucleotides PP_3794: PP_3794 - periplasmic murein D-alanyl-D-alanine endopeptidase, at 4,323,709 to 4,324,635 _3794 PP_3795: PP_3795 - conserved exported protein of unknown function, at 4,324,902 to 4,325,348 _3795 PP_3796: PP_3796 - L-ornithine 5-monooxygenase, at 4,325,523 to 4,326,857 _3796 PP_3797: PP_3797 - conserved membrane protein of unknown function, at 4,327,033 to 4,328,226 _3797 Position (kb) 4325 4326 4327Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4324.591 kb on + strandat 4324.591 kb on + strandat 4324.592 kb on - strandat 4324.592 kb on - strandat 4324.592 kb on - strandat 4324.642 kb on + strandat 4324.643 kb on - strandat 4324.689 kb on + strandat 4324.729 kb on + strandat 4324.729 kb on + strandat 4324.759 kb on + strandat 4324.759 kb on + strandat 4324.760 kb on - strandat 4324.760 kb on - strandat 4324.760 kb on - strandat 4324.780 kb on - strandat 4324.780 kb on - strandat 4324.780 kb on - strandat 4324.780 kb on - strandat 4324.801 kb on + strandat 4324.922 kb on + strandat 4324.922 kb on + strandat 4324.922 kb on + strandat 4324.922 kb on + strandat 4324.923 kb on - strandat 4324.923 kb on - strandat 4324.923 kb on - strandat 4325.028 kb on + strand, within PP_3795at 4325.029 kb on - strand, within PP_3795at 4325.426 kb on - strandat 4325.460 kb on + strandat 4325.460 kb on + strandat 4325.460 kb on + strandat 4325.461 kb on - strandat 4325.461 kb on - strandat 4325.673 kb on + strand, within PP_3796at 4325.674 kb on - strand, within PP_3796at 4325.674 kb on - strand, within PP_3796at 4325.781 kb on + strand, within PP_3796at 4325.781 kb on + strand, within PP_3796at 4325.782 kb on - strand, within PP_3796at 4325.782 kb on - strand, within PP_3796at 4325.782 kb on - strand, within PP_3796at 4325.832 kb on + strand, within PP_3796at 4325.832 kb on + strand, within PP_3796at 4325.859 kb on + strand, within PP_3796at 4325.901 kb on + strand, within PP_3796at 4325.901 kb on + strand, within PP_3796at 4325.901 kb on + strand, within PP_3796at 4325.994 kb on + strand, within PP_3796at 4325.995 kb on - strand, within PP_3796at 4325.995 kb on - strand, within PP_3796at 4326.102 kb on + strand, within PP_3796at 4326.213 kb on + strand, within PP_3796at 4326.214 kb on - strand, within PP_3796at 4326.306 kb on + strand, within PP_3796at 4326.307 kb on - strand, within PP_3796at 4326.308 kb on + strand, within PP_3796at 4326.308 kb on + strand, within PP_3796at 4326.309 kb on - strand, within PP_3796at 4326.321 kb on + strand, within PP_3796at 4326.321 kb on + strand, within PP_3796at 4326.321 kb on + strand, within PP_3796at 4326.363 kb on + strand, within PP_3796at 4326.414 kb on + strand, within PP_3796at 4326.415 kb on - strand, within PP_3796at 4326.415 kb on - strand, within PP_3796at 4326.415 kb on - strand, within PP_3796at 4326.415 kb on - strand, within PP_3796at 4326.427 kb on - strand, within PP_3796at 4326.573 kb on - strand, within PP_3796at 4326.633 kb on + strand, within PP_3796at 4326.633 kb on + strand, within PP_3796at 4326.664 kb on - strand, within PP_3796at 4326.670 kb on + strand, within PP_3796at 4326.670 kb on + strand, within PP_3796at 4326.702 kb on + strand, within PP_3796at 4326.703 kb on - strand, within PP_3796at 4326.973 kb on + strandat 4326.973 kb on + strandat 4327.239 kb on - strand, within PP_3797at 4327.361 kb on - strand, within PP_3797at 4327.364 kb on + strand, within PP_3797at 4327.365 kb on - strand, within PP_3797at 4327.365 kb on - strand, within PP_3797at 4327.365 kb on - strand, within PP_3797at 4327.365 kb on - strand, within PP_3797at 4327.491 kb on - strand, within PP_3797at 4327.543 kb on + strand, within PP_3797at 4327.543 kb on + strand, within PP_3797at 4327.543 kb on + strand, within PP_3797

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Per-strain Table

Position Strand Gene LocusTag Fraction 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
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4,324,591 + -0.5
4,324,591 + +0.3
4,324,592 - +0.5
4,324,592 - -1.4
4,324,592 - +2.9
4,324,642 + -0.4
4,324,643 - +0.6
4,324,689 + +0.2
4,324,729 + +1.2
4,324,729 + +2.6
4,324,759 + -0.5
4,324,759 + +0.2
4,324,760 - +0.7
4,324,760 - -0.4
4,324,760 - +0.2
4,324,780 - -0.4
4,324,780 - +0.3
4,324,780 - -1.5
4,324,780 - +0.0
4,324,801 + -0.4
4,324,922 + +1.7
4,324,922 + -1.0
4,324,922 + -0.1
4,324,922 + -0.2
4,324,923 - -2.3
4,324,923 - -0.4
4,324,923 - +0.1
4,325,028 + PP_3795 0.28 +0.1
4,325,029 - PP_3795 0.28 +2.7
4,325,426 - -0.9
4,325,460 + -0.4
4,325,460 + +0.5
4,325,460 + +0.3
4,325,461 - +0.2
4,325,461 - +1.0
4,325,673 + PP_3796 0.11 -1.0
4,325,674 - PP_3796 0.11 +0.3
4,325,674 - PP_3796 0.11 +0.1
4,325,781 + PP_3796 0.19 +0.2
4,325,781 + PP_3796 0.19 +0.3
4,325,782 - PP_3796 0.19 -0.9
4,325,782 - PP_3796 0.19 +0.5
4,325,782 - PP_3796 0.19 -0.2
4,325,832 + PP_3796 0.23 +0.3
4,325,832 + PP_3796 0.23 +1.4
4,325,859 + PP_3796 0.25 +0.2
4,325,901 + PP_3796 0.28 +1.8
4,325,901 + PP_3796 0.28 +1.7
4,325,901 + PP_3796 0.28 +0.8
4,325,994 + PP_3796 0.35 +1.1
4,325,995 - PP_3796 0.35 +1.3
4,325,995 - PP_3796 0.35 +1.0
4,326,102 + PP_3796 0.43 +0.6
4,326,213 + PP_3796 0.52 +0.6
4,326,214 - PP_3796 0.52 +0.7
4,326,306 + PP_3796 0.59 -1.1
4,326,307 - PP_3796 0.59 +0.3
4,326,308 + PP_3796 0.59 -0.1
4,326,308 + PP_3796 0.59 +1.0
4,326,309 - PP_3796 0.59 -0.3
4,326,321 + PP_3796 0.60 -0.3
4,326,321 + PP_3796 0.60 +0.9
4,326,321 + PP_3796 0.60 -1.7
4,326,363 + PP_3796 0.63 +1.0
4,326,414 + PP_3796 0.67 +0.3
4,326,415 - PP_3796 0.67 +1.1
4,326,415 - PP_3796 0.67 +0.7
4,326,415 - PP_3796 0.67 +0.5
4,326,415 - PP_3796 0.67 +0.6
4,326,427 - PP_3796 0.68 +0.7
4,326,573 - PP_3796 0.79 +1.0
4,326,633 + PP_3796 0.83 +0.3
4,326,633 + PP_3796 0.83 +0.3
4,326,664 - PP_3796 0.85 +0.5
4,326,670 + PP_3796 0.86 -1.6
4,326,670 + PP_3796 0.86 +0.1
4,326,702 + PP_3796 0.88 +0.4
4,326,703 - PP_3796 0.88 +0.5
4,326,973 + +0.6
4,326,973 + -0.0
4,327,239 - PP_3797 0.17 -2.0
4,327,361 - PP_3797 0.27 -1.4
4,327,364 + PP_3797 0.28 +0.5
4,327,365 - PP_3797 0.28 -0.6
4,327,365 - PP_3797 0.28 -1.6
4,327,365 - PP_3797 0.28 -3.0
4,327,365 - PP_3797 0.28 -1.2
4,327,491 - PP_3797 0.38 -3.6
4,327,543 + PP_3797 0.43 -1.6
4,327,543 + PP_3797 0.43 -1.2
4,327,543 + PP_3797 0.43 +1.4

Or see this region's nucleotide sequence