Strain Fitness in Pseudomonas putida KT2440 around PP_1783

Experiment: 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
1,995,608	+				-0.4
1,995,623	+				-0.3
1,995,623	+				+0.8
1,995,623	+				-0.2
1,995,623	+				-1.4
1,995,623	+				+0.3
1,995,623	+				+1.1
1,995,624	-				+1.7
1,995,624	-				+0.5
1,995,624	-				+0.4
1,995,684	+				-0.9
1,995,684	+				+0.3
1,995,685	-				-0.1
1,995,685	-				+3.0
1,995,685	-				-1.1
1,995,742	+				+0.7
1,995,742	+				-0.4
1,995,753	+				-1.3
1,995,754	-				-0.4
1,995,759	+				-0.9
1,995,759	+				-1.2
1,995,759	+				-1.2
1,995,760	-				-2.2
1,995,760	-				-0.4
1,995,827	+				+0.8
1,995,827	+				-1.3
1,995,827	+				-1.8
1,995,827	+				-0.4
1,995,828	-				-0.7
1,995,828	-				-0.9
1,995,828	-				-0.3
1,995,841	-				+0.7
1,995,841	-				-0.7
1,995,871	+				+0.1
1,995,890	-				-0.2
1,995,943	+				-0.5
1,995,943	+				+1.3
1,996,031	+				+1.1
1,996,175	+		PP_1782	0.25	-0.6
1,996,176	-		PP_1782	0.25	-1.5
1,996,193	+		PP_1782	0.28	-0.3
1,996,193	+		PP_1782	0.28	-0.3
1,996,291	+		PP_1782	0.46	+0.1
1,996,299	+		PP_1782	0.47	-0.6
1,996,300	-		PP_1782	0.48	-1.2
1,996,400	+		PP_1782	0.66	-0.2
1,996,401	-		PP_1782	0.66	+2.1
1,996,401	-		PP_1782	0.66	+0.0
1,996,450	+		PP_1782	0.75	+0.2
1,996,451	-		PP_1782	0.75	+0.6
1,996,451	-		PP_1782	0.75	-1.0
1,996,508	+		PP_1782	0.85	+0.5
1,996,509	-		PP_1782	0.86	-1.3
1,996,567	-				+0.2
1,996,757	-				+2.7
1,996,757	-		PP_1783	0.19	+3.7
1,996,757	-		PP_1783	0.19	+3.7
1,996,757	-				+3.7
1,996,757	-				+3.7
1,996,808	-		PP_1783	0.25	+3.7
1,996,853	-				+3.7
1,996,853	-		PP_1783	0.30	+2.1
1,996,961	-		PP_1783	0.42	+3.7
1,996,961	-		PP_1783	0.42	+3.7
1,996,961	-				+3.7
1,997,060	-				+2.1
1,997,136	-		PP_1783	0.62	+2.1
1,997,234	-				+2.7
1,997,479	-				-0.4
1,997,482	-				-0.4
1,998,388	-				+0.5
1,998,388	-				-0.6
1,998,398	+				-2.1
1,998,398	+				-0.4
1,998,398	+				-0.7
1,998,399	-				+1.7
1,998,422	+				+0.9
1,998,423	-				+1.6
1,998,446	-				+0.3