Strain Fitness in Pseudomonas putida KT2440 around PP_0793

Experiment: 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
908,566	-		PP_0792	0.35	-0.9
908,586	+		PP_0792	0.37	-0.8
908,586	+		PP_0792	0.37	-0.0
908,587	-		PP_0792	0.38	-0.7
908,809	-		PP_0792	0.60	-0.4
908,934	+		PP_0792	0.72	+0.1
908,982	+		PP_0792	0.77	-0.1
908,983	-		PP_0792	0.77	+0.6
908,983	-		PP_0792	0.77	+2.3
909,029	-		PP_0792	0.82	-0.1
909,109	+				+0.0
909,153	+				+0.3
909,153	+				-0.9
909,153	+				+0.4
909,224	-				+1.3
909,224	-				+0.1
909,224	-				-0.3
909,256	+				+0.7
909,256	+				-0.1
909,345	+				-0.7
909,435	-				+1.2
909,435	-				+1.1
909,435	-				+0.5
909,453	+				+0.9
909,454	-				+2.9
909,454	-				-0.5
909,454	-				-0.6
909,454	-				-0.9
909,607	+				+1.1
909,607	+				+0.6
909,681	+				+1.3
909,681	+				-2.8
909,682	-				+0.7
909,706	+				+2.1
909,719	+				+1.7
909,747	-				-0.3
909,772	+				+1.3
909,773	-				-0.8
909,786	+		PP_0793	0.10	-1.1
909,786	+		PP_0793	0.10	-1.9
909,786	+		PP_0793	0.10	+1.8
909,787	-		PP_0793	0.10	-1.8
910,661	+		PP_0793	0.41	+0.1
910,662	-		PP_0793	0.41	-1.4
910,662	-		PP_0793	0.41	-0.9
911,122	+		PP_0793	0.57	+0.3
911,122	+		PP_0793	0.57	-1.0
911,122	+				+3.7
911,122	+		PP_0793	0.57	-1.9
911,122	+		PP_0793	0.57	-0.5
911,122	+		PP_0793	0.57	-1.0
911,123	-		PP_0793	0.57	-0.9
911,123	-		PP_0793	0.57	-1.4
911,123	-		PP_0793	0.57	+0.4
911,123	-		PP_0793	0.57	-0.3
911,123	-		PP_0793	0.57	+0.1
911,252	+		PP_0793	0.62	-0.2
911,252	+		PP_0793	0.62	-0.4
911,282	+		PP_0793	0.63	+0.8
911,282	+		PP_0793	0.63	-0.7
911,282	+		PP_0793	0.63	-0.1
911,301	+		PP_0793	0.63	+0.2
911,302	-		PP_0793	0.63	-0.9
911,487	+		PP_0793	0.70	-1.4
911,686	+		PP_0793	0.77	-1.6
911,687	-		PP_0793	0.77	-0.1
911,687	-		PP_0793	0.77	-0.1
911,817	+		PP_0793	0.81	+2.7
911,817	+		PP_0793	0.81	-1.1
911,922	+		PP_0793	0.85	+2.7
912,013	+		PP_0793	0.88	-0.9
912,014	-		PP_0793	0.88	-1.2
912,081	-				-0.6
912,387	+				+0.9
912,510	-		PP_0794	0.17	+1.9
912,621	+		PP_0794	0.29	+2.7
912,622	-		PP_0794	0.29	-0.6
912,622	-		PP_0794	0.29	-0.5
912,833	+		PP_0794	0.51	+2.7
912,833	+		PP_0794	0.51	+2.1
912,834	-		PP_0794	0.51	+2.1
912,904	-		PP_0794	0.59	-0.2
913,304	-				+0.8
913,304	-				-0.9
913,339	+				-1.9
913,340	-				+0.1
913,340	-				-0.3