Strain Fitness in Escherichia coli BW25113 around b4102

Experiment: LB Aerobic with Zinc Pyrithione 0.0000025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntphnH and phnG overlap by 4 nucleotidesphnG and phnF are separated by 0 nucleotidesphnF and phnE are separated by 20 nucleotidesphnE and phnD are separated by 521 nucleotides b4100: phnH - carbon-phosphorus lyase complex subunit (NCBI), at 4,318,686 to 4,319,270 phnH b4101: phnG - carbon-phosphorus lyase complex subunit (NCBI), at 4,319,267 to 4,319,719 phnG b4102: phnF - predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation (NCBI), at 4,319,720 to 4,320,445 phnF b4104: phnE - phosphonate/organophosphate ester transporter subunit (NCBI), at 4,320,466 to 4,320,837 phnE b4105: phnD - phosphonate/organophosphate ester transporter subunit (NCBI), at 4,321,359 to 4,322,375 phnD Position (kb) 4319 4320 4321Strain fitness (log2 ratio) -2 -1 0 1at 4318.748 kb on - strand, within phnHat 4318.799 kb on - strand, within phnHat 4318.814 kb on + strand, within phnHat 4318.855 kb on + strand, within phnHat 4318.855 kb on + strand, within phnHat 4319.165 kb on + strand, within phnHat 4319.223 kb on + strandat 4319.223 kb on + strandat 4319.223 kb on + strandat 4319.228 kb on + strandat 4319.258 kb on + strandat 4319.258 kb on + strandat 4319.259 kb on + strandat 4319.274 kb on - strandat 4319.279 kb on - strandat 4319.279 kb on - strandat 4319.354 kb on - strand, within phnGat 4319.366 kb on - strand, within phnGat 4319.379 kb on - strand, within phnGat 4319.434 kb on - strand, within phnGat 4319.446 kb on - strand, within phnGat 4319.573 kb on + strand, within phnGat 4319.731 kb on - strandat 4319.731 kb on - strandat 4319.803 kb on + strand, within phnFat 4319.803 kb on + strand, within phnFat 4319.803 kb on + strand, within phnFat 4319.811 kb on - strand, within phnFat 4319.811 kb on - strand, within phnFat 4319.985 kb on - strand, within phnFat 4319.999 kb on + strand, within phnFat 4320.073 kb on - strand, within phnFat 4320.121 kb on - strand, within phnFat 4320.253 kb on - strand, within phnFat 4320.253 kb on - strand, within phnFat 4320.292 kb on + strand, within phnFat 4320.326 kb on + strand, within phnFat 4320.348 kb on - strand, within phnFat 4320.405 kb on - strandat 4320.412 kb on + strandat 4320.412 kb on + strandat 4320.652 kb on - strand, within phnEat 4320.670 kb on - strand, within phnEat 4320.678 kb on - strand, within phnEat 4320.691 kb on + strand, within phnEat 4320.804 kb on + strandat 4320.842 kb on + strandat 4320.937 kb on + strandat 4321.008 kb on - strandat 4321.144 kb on - strandat 4321.193 kb on - strandat 4321.193 kb on - strandat 4321.193 kb on - strandat 4321.208 kb on - strandat 4321.248 kb on - strandat 4321.254 kb on + strandat 4321.308 kb on + strandat 4321.310 kb on + strandat 4321.310 kb on + strandat 4321.316 kb on - strandat 4321.421 kb on - strandat 4321.440 kb on - strandat 4321.440 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Zinc Pyrithione 0.0000025 mM
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4,318,748 - phnH b4100 0.11 -1.8
4,318,799 - phnH b4100 0.19 -1.8
4,318,814 + phnH b4100 0.22 +0.7
4,318,855 + phnH b4100 0.29 +0.5
4,318,855 + phnH b4100 0.29 +0.2
4,319,165 + phnH b4100 0.82 +0.7
4,319,223 + +0.3
4,319,223 + -0.3
4,319,223 + +0.3
4,319,228 + -0.0
4,319,258 + +0.1
4,319,258 + +0.8
4,319,259 + +0.2
4,319,274 - -1.8
4,319,279 - -1.8
4,319,279 - -0.1
4,319,354 - phnG b4101 0.19 +0.2
4,319,366 - phnG b4101 0.22 -1.8
4,319,379 - phnG b4101 0.25 -1.8
4,319,434 - phnG b4101 0.37 -1.8
4,319,446 - phnG b4101 0.40 -2.3
4,319,573 + phnG b4101 0.68 +0.6
4,319,731 - -1.6
4,319,731 - -0.4
4,319,803 + phnF b4102 0.11 -0.9
4,319,803 + phnF b4102 0.11 +1.2
4,319,803 + phnF b4102 0.11 -0.9
4,319,811 - phnF b4102 0.13 +0.2
4,319,811 - phnF b4102 0.13 -0.8
4,319,985 - phnF b4102 0.37 -0.1
4,319,999 + phnF b4102 0.38 +0.6
4,320,073 - phnF b4102 0.49 -1.5
4,320,121 - phnF b4102 0.55 -1.4
4,320,253 - phnF b4102 0.73 -1.9
4,320,253 - phnF b4102 0.73 -0.4
4,320,292 + phnF b4102 0.79 +0.1
4,320,326 + phnF b4102 0.83 -1.0
4,320,348 - phnF b4102 0.87 -0.9
4,320,405 - -0.6
4,320,412 + +0.8
4,320,412 + -0.7
4,320,652 - phnE b4104 0.50 -1.2
4,320,670 - phnE b4104 0.55 -0.8
4,320,678 - phnE b4104 0.57 -2.1
4,320,691 + phnE b4104 0.60 -0.3
4,320,804 + -0.4
4,320,842 + +0.6
4,320,937 + -0.9
4,321,008 - -0.6
4,321,144 - -1.0
4,321,193 - -2.1
4,321,193 - +0.0
4,321,193 - -0.9
4,321,208 - -0.1
4,321,248 - -1.4
4,321,254 + +0.7
4,321,308 + +0.3
4,321,310 + +1.1
4,321,310 + -0.8
4,321,316 - -1.1
4,321,421 - -0.7
4,321,440 - -1.3
4,321,440 - -0.6

Or see this region's nucleotide sequence