Strain Fitness in Escherichia coli BW25113 around b3739

Experiment: LB Aerobic with Zinc Pyrithione 0.0000025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntatpE and atpB are separated by 46 nucleotidesatpB and atpI are separated by 8 nucleotidesatpI and gidB are separated by 616 nucleotides b3737: atpE - F0F1 ATP synthase subunit C (NCBI), at 3,918,973 to 3,919,212 atpE b3738: atpB - F0F1 ATP synthase subunit A (NCBI), at 3,919,259 to 3,920,074 atpB b3739: atpI - membrane-bound ATP synthase, dispensable protein, affects expression of atpB (VIMSS), at 3,920,083 to 3,920,463 atpI b3740: gidB - glucose-inhibited division protein B (NCBI), at 3,921,080 to 3,921,703 gidB Position (kb) 3920 3921Strain fitness (log2 ratio) -3 -2 -1 0 1at 3919.227 kb on - strandat 3919.248 kb on - strandat 3919.265 kb on - strandat 3919.265 kb on - strandat 3920.048 kb on - strandat 3920.063 kb on - strandat 3920.063 kb on - strandat 3920.119 kb on - strandat 3920.212 kb on - strand, within atpIat 3920.212 kb on - strand, within atpIat 3920.223 kb on - strand, within atpIat 3920.270 kb on - strand, within atpIat 3920.270 kb on - strand, within atpIat 3920.362 kb on - strand, within atpIat 3920.362 kb on - strand, within atpIat 3920.362 kb on - strand, within atpIat 3920.365 kb on - strand, within atpIat 3920.375 kb on - strand, within atpIat 3920.408 kb on - strand, within atpIat 3920.410 kb on - strand, within atpIat 3920.412 kb on - strand, within atpIat 3920.425 kb on - strand, within atpIat 3920.462 kb on - strandat 3920.488 kb on - strandat 3920.511 kb on - strandat 3920.514 kb on - strandat 3920.533 kb on - strandat 3920.538 kb on - strandat 3920.558 kb on - strandat 3920.561 kb on - strandat 3920.594 kb on - strandat 3920.594 kb on - strandat 3920.638 kb on - strandat 3920.638 kb on - strandat 3920.638 kb on - strandat 3920.638 kb on - strandat 3920.641 kb on + strandat 3920.649 kb on - strandat 3920.651 kb on + strandat 3920.658 kb on - strandat 3920.675 kb on + strandat 3920.675 kb on + strandat 3920.696 kb on - strandat 3920.696 kb on - strandat 3920.698 kb on + strandat 3920.699 kb on + strandat 3920.699 kb on + strandat 3920.707 kb on + strandat 3920.707 kb on - strandat 3920.717 kb on + strandat 3920.722 kb on + strandat 3920.722 kb on + strandat 3920.722 kb on + strandat 3920.725 kb on - strandat 3920.726 kb on - strandat 3920.726 kb on - strandat 3920.729 kb on - strandat 3920.729 kb on - strandat 3920.751 kb on - strandat 3920.768 kb on + strandat 3920.773 kb on + strandat 3920.867 kb on + strandat 3920.877 kb on + strandat 3920.885 kb on - strandat 3920.885 kb on - strandat 3920.920 kb on - strandat 3920.920 kb on - strandat 3920.963 kb on + strandat 3920.963 kb on + strandat 3920.982 kb on - strandat 3920.985 kb on + strandat 3920.992 kb on + strandat 3920.997 kb on + strandat 3920.997 kb on + strandat 3921.014 kb on - strandat 3921.014 kb on - strandat 3921.014 kb on - strandat 3921.014 kb on - strandat 3921.036 kb on + strandat 3921.039 kb on + strandat 3921.039 kb on + strandat 3921.047 kb on - strandat 3921.101 kb on - strandat 3921.113 kb on - strandat 3921.113 kb on - strandat 3921.122 kb on + strandat 3921.122 kb on + strandat 3921.125 kb on - strandat 3921.125 kb on - strandat 3921.125 kb on - strandat 3921.225 kb on - strand, within gidBat 3921.240 kb on + strand, within gidBat 3921.252 kb on - strand, within gidBat 3921.255 kb on + strand, within gidBat 3921.263 kb on - strand, within gidBat 3921.265 kb on - strand, within gidBat 3921.310 kb on - strand, within gidBat 3921.336 kb on - strand, within gidBat 3921.336 kb on - strand, within gidBat 3921.336 kb on - strand, within gidBat 3921.338 kb on + strand, within gidBat 3921.357 kb on - strand, within gidBat 3921.390 kb on - strand, within gidBat 3921.406 kb on + strand, within gidBat 3921.406 kb on + strand, within gidBat 3921.414 kb on + strand, within gidBat 3921.414 kb on + strand, within gidBat 3921.424 kb on - strand, within gidBat 3921.424 kb on - strand, within gidBat 3921.434 kb on - strand, within gidBat 3921.434 kb on - strand, within gidBat 3921.445 kb on + strand, within gidBat 3921.450 kb on + strand, within gidB

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Zinc Pyrithione 0.0000025 mM
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3,919,227 - +1.4
3,919,248 - -0.2
3,919,265 - -1.6
3,919,265 - -0.5
3,920,048 - -0.6
3,920,063 - -2.0
3,920,063 - -2.0
3,920,119 - +0.0
3,920,212 - atpI b3739 0.34 -0.7
3,920,212 - atpI b3739 0.34 -1.4
3,920,223 - atpI b3739 0.37 -1.0
3,920,270 - atpI b3739 0.49 -0.4
3,920,270 - atpI b3739 0.49 +0.4
3,920,362 - atpI b3739 0.73 -0.4
3,920,362 - atpI b3739 0.73 -3.0
3,920,362 - atpI b3739 0.73 +0.5
3,920,365 - atpI b3739 0.74 +0.0
3,920,375 - atpI b3739 0.77 -2.3
3,920,408 - atpI b3739 0.85 -1.0
3,920,410 - atpI b3739 0.86 -1.3
3,920,412 - atpI b3739 0.86 -0.1
3,920,425 - atpI b3739 0.90 -0.2
3,920,462 - +0.2
3,920,488 - -1.1
3,920,511 - +0.2
3,920,514 - -1.3
3,920,533 - -2.1
3,920,538 - -1.2
3,920,558 - +0.1
3,920,561 - +0.1
3,920,594 - -0.6
3,920,594 - -1.2
3,920,638 - -1.0
3,920,638 - +0.2
3,920,638 - -1.4
3,920,638 - -1.1
3,920,641 + +0.0
3,920,649 - -0.2
3,920,651 + +1.4
3,920,658 - -0.6
3,920,675 + +0.4
3,920,675 + -0.8
3,920,696 - -1.4
3,920,696 - -1.0
3,920,698 + +0.6
3,920,699 + -0.2
3,920,699 + +0.8
3,920,707 + -1.5
3,920,707 - +0.4
3,920,717 + +1.0
3,920,722 + -1.7
3,920,722 + -1.1
3,920,722 + +0.7
3,920,725 - +0.4
3,920,726 - +0.0
3,920,726 - -0.8
3,920,729 - -0.2
3,920,729 - +0.8
3,920,751 - -0.6
3,920,768 + -0.2
3,920,773 + -2.4
3,920,867 + -1.2
3,920,877 + -1.5
3,920,885 - +0.1
3,920,885 - +1.1
3,920,920 - -0.7
3,920,920 - +0.7
3,920,963 + +0.7
3,920,963 + -2.3
3,920,982 - +1.1
3,920,985 + -0.4
3,920,992 + +0.4
3,920,997 + +0.0
3,920,997 + -0.3
3,921,014 - -0.3
3,921,014 - -0.3
3,921,014 - +0.6
3,921,014 - +0.8
3,921,036 + +1.1
3,921,039 + +1.1
3,921,039 + +1.4
3,921,047 - +0.4
3,921,101 - +0.1
3,921,113 - +0.4
3,921,113 - +0.4
3,921,122 + +0.5
3,921,122 + +1.0
3,921,125 - -0.1
3,921,125 - -1.0
3,921,125 - +0.9
3,921,225 - gidB b3740 0.23 -1.5
3,921,240 + gidB b3740 0.26 +1.0
3,921,252 - gidB b3740 0.28 -1.1
3,921,255 + gidB b3740 0.28 -0.6
3,921,263 - gidB b3740 0.29 +0.6
3,921,265 - gidB b3740 0.30 +0.8
3,921,310 - gidB b3740 0.37 +0.2
3,921,336 - gidB b3740 0.41 -0.4
3,921,336 - gidB b3740 0.41 +0.4
3,921,336 - gidB b3740 0.41 +0.6
3,921,338 + gidB b3740 0.41 +0.1
3,921,357 - gidB b3740 0.44 +0.5
3,921,390 - gidB b3740 0.50 -0.3
3,921,406 + gidB b3740 0.52 -1.1
3,921,406 + gidB b3740 0.52 +0.2
3,921,414 + gidB b3740 0.54 -0.1
3,921,414 + gidB b3740 0.54 +0.3
3,921,424 - gidB b3740 0.55 -1.0
3,921,424 - gidB b3740 0.55 -0.3
3,921,434 - gidB b3740 0.57 +0.2
3,921,434 - gidB b3740 0.57 -1.4
3,921,445 + gidB b3740 0.58 -0.6
3,921,450 + gidB b3740 0.59 +0.0

Or see this region's nucleotide sequence