Strain Fitness in Escherichia coli BW25113 around b1805

Experiment: LB Aerobic with Zinc Pyrithione 0.0000025 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrnd and fadD are separated by 69 nucleotidesfadD and yeaY are separated by 204 nucleotidesyeaY and yeaZ are separated by 39 nucleotides b1804: rnd - ribonuclease D (NCBI), at 1,884,888 to 1,886,015 rnd b1805: fadD - acyl-CoA synthase (NCBI), at 1,886,085 to 1,887,770 fadD b1806: yeaY - predicted lipoprotein (NCBI), at 1,887,975 to 1,888,556 yeaY b1807: yeaZ - predicted peptidase (NCBI), at 1,888,596 to 1,889,291 yeaZ Position (kb) 1886 1887 1888Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1885.099 kb on - strand, within rndat 1885.229 kb on + strand, within rndat 1885.229 kb on + strand, within rndat 1885.234 kb on + strand, within rndat 1885.369 kb on - strand, within rndat 1885.369 kb on - strand, within rndat 1885.413 kb on - strand, within rndat 1885.590 kb on - strand, within rndat 1885.602 kb on + strand, within rndat 1885.644 kb on + strand, within rndat 1885.644 kb on + strand, within rndat 1885.714 kb on + strand, within rndat 1885.830 kb on + strand, within rndat 1886.442 kb on + strand, within fadDat 1886.442 kb on + strand, within fadDat 1886.528 kb on - strand, within fadDat 1886.528 kb on - strand, within fadDat 1886.531 kb on - strand, within fadDat 1886.558 kb on - strand, within fadDat 1886.671 kb on - strand, within fadDat 1886.704 kb on - strand, within fadDat 1886.704 kb on - strand, within fadDat 1886.718 kb on - strand, within fadDat 1886.718 kb on - strand, within fadDat 1886.718 kb on - strand, within fadDat 1886.754 kb on + strand, within fadDat 1886.976 kb on - strand, within fadDat 1886.976 kb on - strand, within fadDat 1887.085 kb on + strand, within fadDat 1887.087 kb on - strand, within fadDat 1887.098 kb on - strand, within fadDat 1887.130 kb on + strand, within fadDat 1887.130 kb on + strand, within fadDat 1887.187 kb on - strand, within fadDat 1887.187 kb on - strand, within fadDat 1887.261 kb on + strand, within fadDat 1887.261 kb on + strand, within fadDat 1887.321 kb on + strand, within fadDat 1887.381 kb on + strand, within fadDat 1887.381 kb on + strand, within fadDat 1887.445 kb on + strand, within fadDat 1887.453 kb on - strand, within fadDat 1887.453 kb on - strand, within fadDat 1887.455 kb on + strand, within fadDat 1887.455 kb on + strand, within fadDat 1887.461 kb on + strand, within fadDat 1887.762 kb on - strandat 1887.981 kb on + strandat 1888.207 kb on + strand, within yeaYat 1888.428 kb on - strand, within yeaYat 1888.428 kb on - strand, within yeaYat 1888.463 kb on + strand, within yeaYat 1888.586 kb on + strandat 1888.586 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Zinc Pyrithione 0.0000025 mM
remove
1,885,099 - rnd b1804 0.19 +1.5
1,885,229 + rnd b1804 0.30 +0.4
1,885,229 + rnd b1804 0.30 -2.6
1,885,234 + rnd b1804 0.31 +1.6
1,885,369 - rnd b1804 0.43 +2.1
1,885,369 - rnd b1804 0.43 +1.6
1,885,413 - rnd b1804 0.47 +2.9
1,885,590 - rnd b1804 0.62 +1.1
1,885,602 + rnd b1804 0.63 -1.2
1,885,644 + rnd b1804 0.67 +0.8
1,885,644 + rnd b1804 0.67 +1.7
1,885,714 + rnd b1804 0.73 -0.3
1,885,830 + rnd b1804 0.84 +2.1
1,886,442 + fadD b1805 0.21 +1.0
1,886,442 + fadD b1805 0.21 -0.9
1,886,528 - fadD b1805 0.26 -2.0
1,886,528 - fadD b1805 0.26 -1.1
1,886,531 - fadD b1805 0.26 -0.4
1,886,558 - fadD b1805 0.28 -0.4
1,886,671 - fadD b1805 0.35 -0.2
1,886,704 - fadD b1805 0.37 -0.6
1,886,704 - fadD b1805 0.37 -0.3
1,886,718 - fadD b1805 0.38 +0.6
1,886,718 - fadD b1805 0.38 -1.5
1,886,718 - fadD b1805 0.38 -0.3
1,886,754 + fadD b1805 0.40 +0.0
1,886,976 - fadD b1805 0.53 +0.8
1,886,976 - fadD b1805 0.53 -2.2
1,887,085 + fadD b1805 0.59 -0.0
1,887,087 - fadD b1805 0.59 -1.2
1,887,098 - fadD b1805 0.60 +0.2
1,887,130 + fadD b1805 0.62 +0.0
1,887,130 + fadD b1805 0.62 +2.2
1,887,187 - fadD b1805 0.65 -0.6
1,887,187 - fadD b1805 0.65 -0.3
1,887,261 + fadD b1805 0.70 -0.2
1,887,261 + fadD b1805 0.70 -0.4
1,887,321 + fadD b1805 0.73 +0.5
1,887,381 + fadD b1805 0.77 +0.4
1,887,381 + fadD b1805 0.77 -0.3
1,887,445 + fadD b1805 0.81 -0.3
1,887,453 - fadD b1805 0.81 -0.9
1,887,453 - fadD b1805 0.81 +0.4
1,887,455 + fadD b1805 0.81 -2.2
1,887,455 + fadD b1805 0.81 +0.4
1,887,461 + fadD b1805 0.82 +1.4
1,887,762 - +0.2
1,887,981 + -1.9
1,888,207 + yeaY b1806 0.40 +0.8
1,888,428 - yeaY b1806 0.78 -0.4
1,888,428 - yeaY b1806 0.78 +0.4
1,888,463 + yeaY b1806 0.84 -0.3
1,888,586 + +3.2
1,888,586 + +0.4

Or see this region's nucleotide sequence