Strain Fitness in Escherichia coli BW25113 around b1683

Experiment: LB Aerobic with Zinc Pyrithione 0.0000025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsufD and sufC overlap by 26 nucleotidessufC and ynhE are separated by 9 nucleotidesynhE and sufA are separated by 8 nucleotidessufA and rydB are separated by 326 nucleotidesrydB and ydiH are separated by 153 nucleotides b1681: sufD - component of SufBCD complex (NCBI), at 1,758,544 to 1,759,815 sufD b1682: sufC - cysteine desulfurase ATPase component (NCBI), at 1,759,790 to 1,760,536 sufC b1683: ynhE - orf, hypothetical protein (VIMSS), at 1,760,546 to 1,762,033 ynhE b1684: sufA - iron-sulfur cluster assembly scaffold protein (NCBI), at 1,762,042 to 1,762,410 sufA b4430: rydB - regulatory sRNA (NCBI), at 1,762,737 to 1,762,804 rydB b1685: ydiH - predicted protein (RefSeq), at 1,762,958 to 1,763,146 ydiH Position (kb) 1760 1761 1762 1763Strain fitness (log2 ratio) -3 -2 -1 0 1at 1759.576 kb on - strand, within sufDat 1759.578 kb on - strand, within sufDat 1759.578 kb on - strand, within sufDat 1759.590 kb on - strand, within sufDat 1759.590 kb on - strand, within sufDat 1759.624 kb on + strand, within sufDat 1759.624 kb on + strand, within sufDat 1759.806 kb on - strandat 1759.806 kb on - strandat 1759.812 kb on + strandat 1759.812 kb on + strandat 1759.877 kb on + strand, within sufCat 1759.902 kb on - strand, within sufCat 1759.902 kb on - strand, within sufCat 1759.907 kb on - strand, within sufCat 1759.944 kb on + strand, within sufCat 1759.944 kb on + strand, within sufCat 1759.999 kb on + strand, within sufCat 1760.009 kb on - strand, within sufCat 1760.777 kb on - strand, within ynhEat 1760.788 kb on - strand, within ynhEat 1760.968 kb on - strand, within ynhEat 1760.968 kb on - strand, within ynhEat 1761.252 kb on - strand, within ynhEat 1761.371 kb on + strand, within ynhEat 1761.462 kb on + strand, within ynhEat 1761.662 kb on - strand, within ynhEat 1761.706 kb on - strand, within ynhEat 1761.706 kb on - strand, within ynhEat 1761.706 kb on - strand, within ynhEat 1761.721 kb on - strand, within ynhEat 1761.721 kb on - strand, within ynhEat 1761.867 kb on + strand, within ynhEat 1761.868 kb on - strand, within ynhEat 1762.235 kb on - strand, within sufAat 1762.235 kb on - strand, within sufAat 1762.245 kb on - strand, within sufAat 1762.437 kb on + strandat 1762.521 kb on + strandat 1762.546 kb on - strandat 1762.891 kb on - strandat 1762.891 kb on - strandat 1762.904 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Zinc Pyrithione 0.0000025 mM
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1,759,576 - sufD b1681 0.81 -0.9
1,759,578 - sufD b1681 0.81 -0.9
1,759,578 - sufD b1681 0.81 -0.8
1,759,590 - sufD b1681 0.82 +0.1
1,759,590 - sufD b1681 0.82 -1.6
1,759,624 + sufD b1681 0.85 -0.4
1,759,624 + sufD b1681 0.85 -0.6
1,759,806 - -0.5
1,759,806 - -1.2
1,759,812 + -0.3
1,759,812 + +0.8
1,759,877 + sufC b1682 0.12 -0.0
1,759,902 - sufC b1682 0.15 -1.8
1,759,902 - sufC b1682 0.15 -0.6
1,759,907 - sufC b1682 0.16 -2.1
1,759,944 + sufC b1682 0.21 +1.4
1,759,944 + sufC b1682 0.21 +0.9
1,759,999 + sufC b1682 0.28 +0.2
1,760,009 - sufC b1682 0.29 -0.7
1,760,777 - ynhE b1683 0.16 -0.6
1,760,788 - ynhE b1683 0.16 -0.4
1,760,968 - ynhE b1683 0.28 -0.3
1,760,968 - ynhE b1683 0.28 -1.3
1,761,252 - ynhE b1683 0.47 +0.1
1,761,371 + ynhE b1683 0.55 +1.0
1,761,462 + ynhE b1683 0.62 +0.4
1,761,662 - ynhE b1683 0.75 -0.3
1,761,706 - ynhE b1683 0.78 +0.6
1,761,706 - ynhE b1683 0.78 -0.7
1,761,706 - ynhE b1683 0.78 -0.9
1,761,721 - ynhE b1683 0.79 -0.3
1,761,721 - ynhE b1683 0.79 +0.4
1,761,867 + ynhE b1683 0.89 +1.0
1,761,868 - ynhE b1683 0.89 -0.4
1,762,235 - sufA b1684 0.52 -1.4
1,762,235 - sufA b1684 0.52 -2.5
1,762,245 - sufA b1684 0.55 -2.8
1,762,437 + -0.6
1,762,521 + +0.2
1,762,546 - -1.3
1,762,891 - -0.6
1,762,891 - -0.1
1,762,904 - +1.7

Or see this region's nucleotide sequence