Experiment: LB Aerobic with Zinc Pyrithione 0.0000025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yaiE and ykiA are separated by 147 nucleotides ykiA and rdgC are separated by 157 nucleotides rdgC and yajF are separated by 124 nucleotides
b0391: yaiE - hypothetical protein (NCBI), at 407,401 to 407,685
yaiE
b0392: ykiA - hypothetical protein (NCBI), at 407,833 to 408,174
ykiA
b0393: rdgC - recombination associated protein (NCBI), at 408,332 to 409,243
rdgC
b0394: yajF - possible NAGC-like transcriptional regulator (VIMSS), at 409,368 to 410,276
yajF
Position (kb) 408
409
410 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 407.357 kb on - strand at 407.404 kb on + strand at 407.404 kb on + strand at 407.457 kb on + strand, within yaiE at 407.462 kb on + strand, within yaiE at 407.462 kb on + strand, within yaiE at 407.477 kb on + strand, within yaiE at 407.483 kb on + strand, within yaiE at 407.549 kb on - strand, within yaiE at 407.549 kb on - strand, within yaiE at 407.562 kb on + strand, within yaiE at 407.590 kb on - strand, within yaiE at 407.590 kb on - strand, within yaiE at 407.590 kb on - strand, within yaiE at 407.592 kb on + strand, within yaiE at 407.610 kb on + strand, within yaiE at 407.648 kb on + strand, within yaiE at 407.649 kb on + strand, within yaiE at 407.650 kb on + strand, within yaiE at 407.660 kb on + strand at 407.660 kb on + strand at 407.660 kb on + strand at 407.660 kb on + strand at 407.660 kb on + strand at 407.660 kb on + strand at 407.660 kb on + strand at 407.660 kb on + strand at 407.660 kb on + strand at 407.660 kb on + strand at 407.662 kb on + strand at 407.662 kb on + strand at 407.668 kb on - strand at 407.668 kb on - strand at 407.668 kb on - strand at 407.670 kb on + strand at 407.678 kb on + strand at 407.682 kb on + strand at 407.686 kb on + strand at 407.686 kb on + strand at 407.787 kb on + strand at 407.787 kb on + strand at 407.802 kb on + strand at 407.811 kb on - strand at 407.828 kb on - strand at 407.828 kb on - strand at 407.828 kb on - strand at 407.853 kb on - strand at 407.853 kb on - strand at 407.858 kb on - strand at 407.862 kb on + strand at 407.878 kb on + strand, within ykiA at 407.878 kb on + strand, within ykiA at 407.884 kb on - strand, within ykiA at 407.884 kb on - strand, within ykiA at 407.888 kb on + strand, within ykiA at 407.888 kb on + strand, within ykiA at 407.893 kb on - strand, within ykiA at 407.893 kb on - strand, within ykiA at 407.893 kb on - strand, within ykiA at 407.934 kb on + strand, within ykiA at 407.942 kb on + strand, within ykiA at 407.942 kb on + strand, within ykiA at 407.942 kb on + strand, within ykiA at 407.942 kb on - strand, within ykiA at 407.942 kb on - strand, within ykiA at 407.943 kb on + strand, within ykiA at 407.943 kb on + strand, within ykiA at 407.948 kb on - strand, within ykiA at 407.948 kb on - strand, within ykiA at 407.956 kb on - strand, within ykiA at 407.956 kb on - strand, within ykiA at 407.958 kb on + strand, within ykiA at 407.958 kb on + strand, within ykiA at 407.958 kb on + strand, within ykiA at 407.963 kb on + strand, within ykiA at 407.966 kb on + strand, within ykiA at 407.966 kb on + strand, within ykiA at 407.966 kb on + strand, within ykiA at 407.966 kb on - strand, within ykiA at 407.967 kb on + strand, within ykiA at 407.968 kb on + strand, within ykiA at 407.969 kb on - strand, within ykiA at 407.973 kb on + strand, within ykiA at 407.975 kb on - strand, within ykiA at 407.976 kb on - strand, within ykiA at 407.977 kb on + strand, within ykiA at 407.977 kb on - strand, within ykiA at 407.977 kb on - strand, within ykiA at 407.978 kb on + strand, within ykiA at 407.980 kb on + strand, within ykiA at 407.980 kb on + strand, within ykiA at 407.987 kb on - strand, within ykiA at 407.998 kb on + strand, within ykiA at 407.998 kb on + strand, within ykiA at 407.999 kb on - strand, within ykiA at 407.999 kb on - strand, within ykiA at 408.005 kb on - strand, within ykiA at 408.012 kb on + strand, within ykiA at 408.041 kb on + strand, within ykiA at 408.046 kb on + strand, within ykiA at 408.046 kb on + strand, within ykiA at 408.049 kb on - strand, within ykiA at 408.050 kb on - strand, within ykiA at 408.113 kb on + strand, within ykiA at 408.167 kb on + strand at 408.188 kb on - strand at 408.193 kb on + strand at 408.193 kb on + strand at 408.194 kb on + strand at 408.195 kb on - strand at 408.195 kb on - strand at 408.200 kb on + strand at 408.200 kb on - strand at 408.200 kb on - strand at 408.200 kb on - strand at 408.200 kb on - strand at 408.250 kb on + strand at 408.255 kb on + strand at 408.268 kb on - strand at 408.279 kb on - strand at 408.279 kb on - strand at 408.282 kb on - strand at 408.283 kb on + strand at 408.291 kb on - strand at 408.291 kb on - strand at 408.292 kb on - strand at 408.296 kb on - strand at 408.296 kb on - strand at 408.301 kb on - strand at 408.301 kb on - strand at 408.301 kb on - strand at 408.337 kb on + strand at 408.382 kb on + strand at 408.382 kb on - strand at 408.382 kb on - strand at 408.481 kb on + strand, within rdgC at 408.482 kb on - strand, within rdgC at 408.499 kb on - strand, within rdgC at 408.512 kb on - strand, within rdgC at 408.512 kb on - strand, within rdgC at 408.667 kb on - strand, within rdgC at 408.667 kb on - strand, within rdgC at 408.680 kb on + strand, within rdgC at 408.707 kb on - strand, within rdgC at 408.707 kb on - strand, within rdgC at 408.826 kb on - strand, within rdgC at 408.834 kb on + strand, within rdgC at 408.834 kb on + strand, within rdgC at 408.834 kb on - strand, within rdgC at 408.834 kb on - strand, within rdgC at 408.893 kb on + strand, within rdgC at 408.893 kb on + strand, within rdgC at 408.906 kb on - strand, within rdgC at 408.913 kb on - strand, within rdgC at 408.913 kb on - strand, within rdgC at 408.958 kb on + strand, within rdgC at 408.958 kb on + strand, within rdgC at 409.120 kb on + strand, within rdgC at 409.134 kb on + strand, within rdgC at 409.144 kb on + strand, within rdgC at 409.144 kb on + strand, within rdgC at 409.180 kb on + strand at 409.378 kb on - strand at 409.378 kb on - strand at 409.378 kb on - strand at 409.407 kb on + strand at 409.413 kb on + strand at 409.416 kb on - strand at 409.426 kb on - strand at 409.449 kb on + strand at 409.453 kb on + strand at 409.485 kb on + strand, within yajF at 409.621 kb on - strand, within yajF at 409.638 kb on + strand, within yajF at 409.707 kb on + strand, within yajF at 409.763 kb on + strand, within yajF at 409.763 kb on + strand, within yajF at 409.821 kb on + strand, within yajF at 409.821 kb on + strand, within yajF at 409.897 kb on - strand, within yajF at 409.961 kb on - strand, within yajF at 409.977 kb on + strand, within yajF at 409.977 kb on + strand, within yajF at 409.980 kb on - strand, within yajF at 409.980 kb on - strand, within yajF at 409.992 kb on + strand, within yajF at 410.052 kb on + strand, within yajF at 410.060 kb on - strand, within yajF at 410.060 kb on - strand, within yajF at 410.098 kb on + strand, within yajF at 410.098 kb on + strand, within yajF at 410.124 kb on + strand, within yajF at 410.124 kb on + strand, within yajF at 410.129 kb on + strand, within yajF at 410.132 kb on - strand, within yajF at 410.151 kb on - strand, within yajF
Per-strain Table
Position Strand Gene LocusTag Fraction LB Aerobic with Zinc Pyrithione 0.0000025 mM remove 407,357 - +0.0 407,404 + -0.2 407,404 + +0.2 407,457 + yaiE b0391 0.20 +0.6 407,462 + yaiE b0391 0.21 +0.3 407,462 + yaiE b0391 0.21 +0.8 407,477 + yaiE b0391 0.27 +0.2 407,483 + yaiE b0391 0.29 +0.7 407,549 - yaiE b0391 0.52 +0.8 407,549 - yaiE b0391 0.52 -0.5 407,562 + yaiE b0391 0.56 +0.9 407,590 - yaiE b0391 0.66 +1.1 407,590 - yaiE b0391 0.66 +0.8 407,590 - yaiE b0391 0.66 +0.2 407,592 + yaiE b0391 0.67 -0.1 407,610 + yaiE b0391 0.73 -0.1 407,648 + yaiE b0391 0.87 +0.5 407,649 + yaiE b0391 0.87 -0.2 407,650 + yaiE b0391 0.87 +0.7 407,660 + +0.0 407,660 + +1.6 407,660 + +1.4 407,660 + +0.2 407,660 + +1.4 407,660 + +0.3 407,660 + +0.2 407,660 + -0.0 407,660 + +0.5 407,660 + -0.2 407,662 + +0.6 407,662 + -0.1 407,668 - +0.8 407,668 - +0.8 407,668 - +0.8 407,670 + +1.5 407,678 + -0.2 407,682 + -1.0 407,686 + +0.6 407,686 + +0.2 407,787 + -1.2 407,787 + -0.2 407,802 + +1.0 407,811 - +0.8 407,828 - +0.0 407,828 - -0.0 407,828 - -0.5 407,853 - +0.4 407,853 - +2.0 407,858 - +5.9 407,862 + +0.8 407,878 + ykiA b0392 0.13 -0.8 407,878 + ykiA b0392 0.13 +0.8 407,884 - ykiA b0392 0.15 +0.5 407,884 - ykiA b0392 0.15 +0.2 407,888 + ykiA b0392 0.16 +0.8 407,888 + ykiA b0392 0.16 +0.8 407,893 - ykiA b0392 0.18 +0.8 407,893 - ykiA b0392 0.18 +0.6 407,893 - ykiA b0392 0.18 +0.4 407,934 + ykiA b0392 0.30 +0.8 407,942 + ykiA b0392 0.32 +0.8 407,942 + ykiA b0392 0.32 +0.8 407,942 + ykiA b0392 0.32 +0.8 407,942 - ykiA b0392 0.32 -0.1 407,942 - ykiA b0392 0.32 -0.1 407,943 + ykiA b0392 0.32 -2.4 407,943 + ykiA b0392 0.32 -1.2 407,948 - ykiA b0392 0.34 -0.8 407,948 - ykiA b0392 0.34 -0.8 407,956 - ykiA b0392 0.36 -0.4 407,956 - ykiA b0392 0.36 +0.5 407,958 + ykiA b0392 0.37 +1.8 407,958 + ykiA b0392 0.37 +0.2 407,958 + ykiA b0392 0.37 -1.2 407,963 + ykiA b0392 0.38 -0.2 407,966 + ykiA b0392 0.39 +1.5 407,966 + ykiA b0392 0.39 +0.1 407,966 + ykiA b0392 0.39 -0.2 407,966 - ykiA b0392 0.39 +0.2 407,967 + ykiA b0392 0.39 -0.7 407,968 + ykiA b0392 0.39 +0.2 407,969 - ykiA b0392 0.40 +0.4 407,973 + ykiA b0392 0.41 -1.8 407,975 - ykiA b0392 0.42 +0.7 407,976 - ykiA b0392 0.42 +0.1 407,977 + ykiA b0392 0.42 -0.6 407,977 - ykiA b0392 0.42 +1.6 407,977 - ykiA b0392 0.42 +0.1 407,978 + ykiA b0392 0.42 +1.4 407,980 + ykiA b0392 0.43 +0.6 407,980 + ykiA b0392 0.43 -0.4 407,987 - ykiA b0392 0.45 +0.6 407,998 + ykiA b0392 0.48 +1.5 407,998 + ykiA b0392 0.48 +0.8 407,999 - ykiA b0392 0.49 +0.2 407,999 - ykiA b0392 0.49 +0.3 408,005 - ykiA b0392 0.50 -0.2 408,012 + ykiA b0392 0.52 +0.9 408,041 + ykiA b0392 0.61 +0.8 408,046 + ykiA b0392 0.62 -2.0 408,046 + ykiA b0392 0.62 +1.0 408,049 - ykiA b0392 0.63 +0.8 408,050 - ykiA b0392 0.63 +0.1 408,113 + ykiA b0392 0.82 +1.8 408,167 + -1.3 408,188 - -0.1 408,193 + +0.3 408,193 + -0.3 408,194 + -0.2 408,195 - -0.2 408,195 - +0.1 408,200 + +0.5 408,200 - -0.2 408,200 - +0.8 408,200 - +0.8 408,200 - +1.8 408,250 + +0.2 408,255 + +1.8 408,268 - +0.2 408,279 - +1.4 408,279 - +0.8 408,282 - +0.8 408,283 + -0.2 408,291 - -0.3 408,291 - -0.4 408,292 - +0.0 408,296 - +1.3 408,296 - -1.8 408,301 - +0.2 408,301 - -0.6 408,301 - -0.5 408,337 + +0.8 408,382 + +0.8 408,382 - -0.3 408,382 - +0.8 408,481 + rdgC b0393 0.16 +0.9 408,482 - rdgC b0393 0.16 +1.5 408,499 - rdgC b0393 0.18 +1.9 408,512 - rdgC b0393 0.20 +2.5 408,512 - rdgC b0393 0.20 +1.8 408,667 - rdgC b0393 0.37 +2.0 408,667 - rdgC b0393 0.37 +2.2 408,680 + rdgC b0393 0.38 +1.4 408,707 - rdgC b0393 0.41 +2.2 408,707 - rdgC b0393 0.41 +2.0 408,826 - rdgC b0393 0.54 +1.1 408,834 + rdgC b0393 0.55 +2.2 408,834 + rdgC b0393 0.55 +2.5 408,834 - rdgC b0393 0.55 +1.5 408,834 - rdgC b0393 0.55 +3.0 408,893 + rdgC b0393 0.62 -0.0 408,893 + rdgC b0393 0.62 +2.1 408,906 - rdgC b0393 0.63 +2.0 408,913 - rdgC b0393 0.64 +2.0 408,913 - rdgC b0393 0.64 +1.1 408,958 + rdgC b0393 0.69 +1.4 408,958 + rdgC b0393 0.69 +1.7 409,120 + rdgC b0393 0.86 +1.5 409,134 + rdgC b0393 0.88 +1.3 409,144 + rdgC b0393 0.89 +1.1 409,144 + rdgC b0393 0.89 +2.0 409,180 + +1.4 409,378 - +0.2 409,378 - -0.2 409,378 - -0.1 409,407 + +0.3 409,413 + +0.8 409,416 - -0.5 409,426 - -0.2 409,449 + +1.8 409,453 + +1.2 409,485 + yajF b0394 0.13 +0.1 409,621 - yajF b0394 0.28 +0.3 409,638 + yajF b0394 0.30 -0.1 409,707 + yajF b0394 0.37 +0.1 409,763 + yajF b0394 0.43 +2.4 409,763 + yajF b0394 0.43 -0.4 409,821 + yajF b0394 0.50 -2.0 409,821 + yajF b0394 0.50 +1.5 409,897 - yajF b0394 0.58 -1.2 409,961 - yajF b0394 0.65 -0.2 409,977 + yajF b0394 0.67 +0.9 409,977 + yajF b0394 0.67 -0.0 409,980 - yajF b0394 0.67 +2.1 409,980 - yajF b0394 0.67 -1.2 409,992 + yajF b0394 0.69 +0.1 410,052 + yajF b0394 0.75 -0.1 410,060 - yajF b0394 0.76 -0.5 410,060 - yajF b0394 0.76 -0.1 410,098 + yajF b0394 0.80 +0.9 410,098 + yajF b0394 0.80 -0.8 410,124 + yajF b0394 0.83 -1.4 410,124 + yajF b0394 0.83 +1.8 410,129 + yajF b0394 0.84 +0.8 410,132 - yajF b0394 0.84 +0.3 410,151 - yajF b0394 0.86 +0.8
Or see this region's nucleotide sequence