Strain Fitness in Pseudomonas putida KT2440 around PP_5138

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
5,862,112	+		PP_5137	0.36	-0.3
5,862,134	-		PP_5137	0.38	-0.0
5,862,207	-		PP_5137	0.45	+0.6
5,862,388	+		PP_5137	0.62	-0.5
5,862,389	-		PP_5137	0.62	-0.1
5,862,414	+		PP_5137	0.65	+3.0
5,862,414	+		PP_5137	0.65	+0.2
5,862,415	-		PP_5137	0.65	-1.4
5,862,415	-		PP_5137	0.65	-0.6
5,862,415	-		PP_5137	0.65	+1.2
5,862,415	-		PP_5137	0.65	-0.0
5,862,479	-		PP_5137	0.71	-0.8
5,862,520	+		PP_5137	0.75	+1.0
5,862,542	-		PP_5137	0.77	-0.5
5,862,542	-		PP_5137	0.77	+1.4
5,862,573	-		PP_5137	0.80	+0.9
5,862,589	+		PP_5137	0.81	-0.7
5,862,590	-		PP_5137	0.81	-0.5
5,862,590	-		PP_5137	0.81	-0.1
5,862,597	-		PP_5137	0.82	-1.4
5,862,722	+				+0.0
5,862,759	-				-0.0
5,862,821	+				-1.7
5,862,821	+				-0.6
5,862,822	-				+0.9
5,862,822	-				+0.9
5,862,822	-				+0.4
5,862,822	-				-0.2
5,862,822	-				+0.5
5,862,869	+				+1.5
5,862,875	+				+2.4
5,862,875	+				-1.5
5,862,876	-				-1.0
5,862,877	+				-1.7
5,862,877	+				-0.5
5,862,877	+				+0.8
5,862,877	+				+1.3
5,862,878	-				+0.0
5,862,878	-				-1.5
5,862,878	-				+0.5
5,862,878	-				+0.8
5,862,878	-				+0.2
5,862,881	+				+0.4
5,862,881	+				+0.0
5,862,882	-				+1.2
5,862,882	-				-1.4
5,862,882	-				-1.7
5,862,887	+				-1.0
5,862,887	+				-0.2
5,862,887	+				-1.2
5,862,887	+				-0.6
5,862,888	-				-0.8
5,862,888	-				+0.4
5,862,888	-				-0.7
5,862,888	-				+0.1
5,862,890	+				-0.7
5,862,890	+				+1.7
5,862,891	-				+0.6
5,862,901	-				-0.6
5,862,931	-				+0.3
5,862,931	-				-0.8
5,862,970	+				-1.1
5,862,970	+				+0.1
5,862,970	+				-0.5
5,862,970	+				-0.4
5,862,971	-				-0.3
5,862,971	-				+1.1
5,862,971	-				+0.8
5,863,020	+				-1.6
5,863,101	+				-0.4
5,863,101	+				-0.9
5,863,101	+				-0.4
5,863,101	+				-2.2
5,863,107	+		PP_5138	0.10	+1.4
5,863,107	+		PP_5138	0.10	-0.1
5,863,108	-		PP_5138	0.10	+0.3
5,863,108	-		PP_5138	0.10	-0.0
5,863,108	-		PP_5138	0.10	-0.1
5,863,108	-		PP_5138	0.10	+0.1
5,863,424	+		PP_5138	0.47	-1.3
5,863,564	-		PP_5138	0.63	-0.9
5,863,564	-		PP_5138	0.63	-1.2
5,863,587	+		PP_5138	0.65	-0.9
5,863,587	+				+2.0
5,863,587	+		PP_5138	0.65	+0.4
5,863,587	+		PP_5138	0.65	+0.0
5,863,587	+		PP_5138	0.65	+1.7
5,863,587	+		PP_5138	0.65	-1.3
5,863,588	-		PP_5138	0.65	-1.1
5,863,588	-		PP_5138	0.65	+0.5
5,863,588	-		PP_5138	0.65	+1.3
5,863,588	-		PP_5138	0.65	+2.0
5,863,588	-		PP_5138	0.65	+0.6
5,863,588	-		PP_5138	0.65	-0.8
5,863,590	+		PP_5138	0.66	+0.4
5,863,590	+		PP_5138	0.66	-0.7
5,863,590	+		PP_5138	0.66	-0.3
5,863,590	+		PP_5138	0.66	-0.2
5,863,704	-		PP_5138	0.79	-0.2
5,863,744	-		PP_5138	0.83	-0.2
5,863,860	+				+1.4
5,863,860	+				+1.3
5,863,860	+				-0.2
5,863,861	-				-0.8
5,863,861	-				+1.7
5,863,861	-				+0.7
5,863,861	-				-0.3
5,863,861	-				+0.1
5,863,861	-				-0.8
5,863,861	-				-0.0
5,863,861	-				+2.6
5,863,890	+				-0.2
5,863,890	+				-0.4
5,863,890	+				-0.5
5,863,890	+				-0.1
5,863,890	+				-0.2
5,863,890	+				-0.1
5,863,890	+				-1.5
5,863,890	+				-0.4
5,863,890	+				+1.1
5,863,891	-				+0.4
5,863,891	-				-0.7
5,863,891	-				+0.4
5,863,891	-				-0.9
5,863,891	-				-0.5
5,863,899	+				-0.6
5,863,899	+				+0.2
5,863,900	-				+0.6
5,864,247	+		PP_5139	0.15	-0.4
5,864,247	+		PP_5139	0.15	-2.2
5,864,574	+		PP_5139	0.30	+0.2