Strain Fitness in Pseudomonas putida KT2440 around PP_5136

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_5135 and PP_5136 are separated by 18 nucleotidesPP_5136 and PP_5137 are separated by 1 nucleotides PP_5135: PP_5135 - ABC transporter, periplasmic binding protein, at 5,858,960 to 5,859,985 _5135 PP_5136: PP_5136 - ABC transporter, permease protein, at 5,860,004 to 5,861,728 _5136 PP_5137: PP_5137 - ferric iron ABC transporter, ATP-binding protein, at 5,861,730 to 5,862,788 _5137 Position (kb) 5860 5861 5862Strain fitness (log2 ratio) -1 0 1 2 3 4at 5859.076 kb on - strand, within PP_5135at 5859.144 kb on + strand, within PP_5135at 5859.144 kb on + strand, within PP_5135at 5859.145 kb on - strand, within PP_5135at 5859.325 kb on + strand, within PP_5135at 5859.384 kb on + strand, within PP_5135at 5859.384 kb on + strand, within PP_5135at 5859.385 kb on - strand, within PP_5135at 5859.385 kb on - strand, within PP_5135at 5859.385 kb on - strand, within PP_5135at 5859.385 kb on - strand, within PP_5135at 5859.417 kb on + strand, within PP_5135at 5859.417 kb on + strand, within PP_5135at 5859.418 kb on - strand, within PP_5135at 5859.519 kb on + strand, within PP_5135at 5859.520 kb on - strand, within PP_5135at 5859.520 kb on - strand, within PP_5135at 5859.690 kb on + strand, within PP_5135at 5859.691 kb on - strand, within PP_5135at 5859.691 kb on - strand, within PP_5135at 5859.803 kb on - strand, within PP_5135at 5859.867 kb on + strand, within PP_5135at 5859.868 kb on - strand, within PP_5135at 5859.901 kb on - strandat 5859.901 kb on - strandat 5859.989 kb on + strandat 5859.990 kb on - strandat 5859.998 kb on + strandat 5859.999 kb on - strandat 5860.194 kb on + strand, within PP_5136at 5860.233 kb on - strandat 5860.242 kb on + strand, within PP_5136at 5860.242 kb on + strand, within PP_5136at 5860.305 kb on + strand, within PP_5136at 5860.398 kb on + strand, within PP_5136at 5860.398 kb on + strand, within PP_5136at 5860.481 kb on + strand, within PP_5136at 5860.481 kb on + strand, within PP_5136at 5860.481 kb on + strand, within PP_5136at 5860.482 kb on - strand, within PP_5136at 5860.482 kb on - strand, within PP_5136at 5860.482 kb on - strand, within PP_5136at 5860.482 kb on - strand, within PP_5136at 5860.486 kb on - strand, within PP_5136at 5860.500 kb on - strand, within PP_5136at 5860.588 kb on - strand, within PP_5136at 5860.649 kb on - strand, within PP_5136at 5860.649 kb on - strand, within PP_5136at 5860.649 kb on - strand, within PP_5136at 5860.649 kb on - strand, within PP_5136at 5860.695 kb on + strand, within PP_5136at 5860.696 kb on - strand, within PP_5136at 5860.722 kb on + strand, within PP_5136at 5860.722 kb on + strand, within PP_5136at 5860.749 kb on + strand, within PP_5136at 5860.989 kb on + strand, within PP_5136at 5860.990 kb on - strand, within PP_5136at 5860.990 kb on - strand, within PP_5136at 5861.037 kb on - strand, within PP_5136at 5861.053 kb on + strand, within PP_5136at 5861.053 kb on + strand, within PP_5136at 5861.053 kb on + strand, within PP_5136at 5861.066 kb on + strand, within PP_5136at 5861.066 kb on + strand, within PP_5136at 5861.066 kb on + strand, within PP_5136at 5861.087 kb on + strand, within PP_5136at 5861.227 kb on + strand, within PP_5136at 5861.228 kb on - strand, within PP_5136at 5861.229 kb on + strand, within PP_5136at 5861.229 kb on + strand, within PP_5136at 5861.230 kb on - strand, within PP_5136at 5861.230 kb on - strand, within PP_5136at 5861.230 kb on - strand, within PP_5136at 5861.230 kb on - strand, within PP_5136at 5861.266 kb on - strand, within PP_5136at 5861.269 kb on + strand, within PP_5136at 5861.269 kb on + strand, within PP_5136at 5861.270 kb on - strand, within PP_5136at 5861.270 kb on - strand, within PP_5136at 5861.270 kb on - strand, within PP_5136at 5861.316 kb on + strand, within PP_5136at 5861.430 kb on + strand, within PP_5136at 5861.430 kb on + strand, within PP_5136at 5861.430 kb on + strand, within PP_5136at 5861.431 kb on - strand, within PP_5136at 5862.112 kb on + strand, within PP_5137at 5862.134 kb on - strand, within PP_5137at 5862.207 kb on - strand, within PP_5137at 5862.388 kb on + strand, within PP_5137at 5862.389 kb on - strand, within PP_5137at 5862.414 kb on + strand, within PP_5137at 5862.414 kb on + strand, within PP_5137at 5862.415 kb on - strand, within PP_5137at 5862.415 kb on - strand, within PP_5137at 5862.415 kb on - strand, within PP_5137at 5862.415 kb on - strand, within PP_5137at 5862.479 kb on - strand, within PP_5137at 5862.520 kb on + strand, within PP_5137at 5862.542 kb on - strand, within PP_5137at 5862.542 kb on - strand, within PP_5137at 5862.573 kb on - strand, within PP_5137at 5862.589 kb on + strand, within PP_5137at 5862.590 kb on - strand, within PP_5137at 5862.590 kb on - strand, within PP_5137at 5862.597 kb on - strand, within PP_5137at 5862.722 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
remove
5,859,076 - PP_5135 0.11 -1.1
5,859,144 + PP_5135 0.18 -0.3
5,859,144 + PP_5135 0.18 +0.1
5,859,145 - PP_5135 0.18 +1.0
5,859,325 + PP_5135 0.36 -1.0
5,859,384 + PP_5135 0.41 -0.7
5,859,384 + PP_5135 0.41 +0.5
5,859,385 - PP_5135 0.41 -0.3
5,859,385 - PP_5135 0.41 +4.0
5,859,385 - PP_5135 0.41 +0.5
5,859,385 - PP_5135 0.41 +0.3
5,859,417 + PP_5135 0.45 +0.3
5,859,417 + PP_5135 0.45 -0.7
5,859,418 - PP_5135 0.45 -0.4
5,859,519 + PP_5135 0.54 -0.6
5,859,520 - PP_5135 0.55 +0.7
5,859,520 - PP_5135 0.55 +0.8
5,859,690 + PP_5135 0.71 +0.4
5,859,691 - PP_5135 0.71 -0.7
5,859,691 - PP_5135 0.71 -0.2
5,859,803 - PP_5135 0.82 -0.0
5,859,867 + PP_5135 0.88 +0.9
5,859,868 - PP_5135 0.88 +0.8
5,859,901 - -0.5
5,859,901 - -0.7
5,859,989 + -0.1
5,859,990 - -1.6
5,859,998 + -0.5
5,859,999 - -0.4
5,860,194 + PP_5136 0.11 +0.7
5,860,233 - +4.0
5,860,242 + PP_5136 0.14 +1.1
5,860,242 + PP_5136 0.14 -0.5
5,860,305 + PP_5136 0.17 -0.2
5,860,398 + PP_5136 0.23 +0.1
5,860,398 + PP_5136 0.23 -0.3
5,860,481 + PP_5136 0.28 -1.4
5,860,481 + PP_5136 0.28 +0.8
5,860,481 + PP_5136 0.28 -0.2
5,860,482 - PP_5136 0.28 -0.2
5,860,482 - PP_5136 0.28 -0.1
5,860,482 - PP_5136 0.28 -0.1
5,860,482 - PP_5136 0.28 +0.4
5,860,486 - PP_5136 0.28 +0.4
5,860,500 - PP_5136 0.29 +0.3
5,860,588 - PP_5136 0.34 -0.7
5,860,649 - PP_5136 0.37 +0.6
5,860,649 - PP_5136 0.37 -1.4
5,860,649 - PP_5136 0.37 -0.5
5,860,649 - PP_5136 0.37 +0.4
5,860,695 + PP_5136 0.40 -1.7
5,860,696 - PP_5136 0.40 -0.5
5,860,722 + PP_5136 0.42 -1.7
5,860,722 + PP_5136 0.42 -0.4
5,860,749 + PP_5136 0.43 -0.6
5,860,989 + PP_5136 0.57 +1.3
5,860,990 - PP_5136 0.57 -1.3
5,860,990 - PP_5136 0.57 +0.3
5,861,037 - PP_5136 0.60 -0.4
5,861,053 + PP_5136 0.61 -0.1
5,861,053 + PP_5136 0.61 -0.0
5,861,053 + PP_5136 0.61 -0.9
5,861,066 + PP_5136 0.62 -1.0
5,861,066 + PP_5136 0.62 +1.1
5,861,066 + PP_5136 0.62 -0.0
5,861,087 + PP_5136 0.63 +0.2
5,861,227 + PP_5136 0.71 -0.7
5,861,228 - PP_5136 0.71 +0.9
5,861,229 + PP_5136 0.71 +0.3
5,861,229 + PP_5136 0.71 +1.4
5,861,230 - PP_5136 0.71 -0.7
5,861,230 - PP_5136 0.71 +0.3
5,861,230 - PP_5136 0.71 +0.3
5,861,230 - PP_5136 0.71 +0.1
5,861,266 - PP_5136 0.73 -0.5
5,861,269 + PP_5136 0.73 +2.7
5,861,269 + PP_5136 0.73 -0.3
5,861,270 - PP_5136 0.73 -0.2
5,861,270 - PP_5136 0.73 -1.2
5,861,270 - PP_5136 0.73 +0.5
5,861,316 + PP_5136 0.76 -1.7
5,861,430 + PP_5136 0.83 -0.0
5,861,430 + PP_5136 0.83 -1.6
5,861,430 + PP_5136 0.83 +0.5
5,861,431 - PP_5136 0.83 +3.0
5,862,112 + PP_5137 0.36 -0.3
5,862,134 - PP_5137 0.38 -0.0
5,862,207 - PP_5137 0.45 +0.6
5,862,388 + PP_5137 0.62 -0.5
5,862,389 - PP_5137 0.62 -0.1
5,862,414 + PP_5137 0.65 +3.0
5,862,414 + PP_5137 0.65 +0.2
5,862,415 - PP_5137 0.65 -1.4
5,862,415 - PP_5137 0.65 -0.6
5,862,415 - PP_5137 0.65 +1.2
5,862,415 - PP_5137 0.65 -0.0
5,862,479 - PP_5137 0.71 -0.8
5,862,520 + PP_5137 0.75 +1.0
5,862,542 - PP_5137 0.77 -0.5
5,862,542 - PP_5137 0.77 +1.4
5,862,573 - PP_5137 0.80 +0.9
5,862,589 + PP_5137 0.81 -0.7
5,862,590 - PP_5137 0.81 -0.5
5,862,590 - PP_5137 0.81 -0.1
5,862,597 - PP_5137 0.82 -1.4
5,862,722 + +0.0

Or see this region's nucleotide sequence