Strain Fitness in Pseudomonas putida KT2440 around PP_5110

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
5,829,017	-				-1.2
5,829,017	-				+0.8
5,829,019	-				-0.7
5,829,096	+		PP_5109	0.13	-0.3
5,829,096	+		PP_5109	0.13	+0.3
5,829,186	+		PP_5109	0.22	-0.1
5,829,186	+		PP_5109	0.22	+0.5
5,829,186	+		PP_5109	0.22	-0.0
5,829,186	+		PP_5109	0.22	-0.2
5,829,187	-		PP_5109	0.22	-1.6
5,829,187	-		PP_5109	0.22	+1.7
5,829,201	+		PP_5109	0.23	-0.5
5,829,201	+		PP_5109	0.23	-1.2
5,829,201	+		PP_5109	0.23	-0.8
5,829,222	+		PP_5109	0.25	+2.4
5,829,223	-		PP_5109	0.25	-0.7
5,829,266	-		PP_5109	0.30	+0.4
5,829,305	+		PP_5109	0.33	-0.1
5,829,306	-		PP_5109	0.33	-2.3
5,829,309	-		PP_5109	0.34	+0.9
5,829,591	+		PP_5109	0.61	+0.1
5,829,591	+		PP_5109	0.61	-0.8
5,829,592	-		PP_5109	0.61	+4.0
5,829,592	-		PP_5109	0.61	-0.6
5,829,675	+		PP_5109	0.69	-0.1
5,829,973	+				+0.8
5,829,974	-				-0.8
5,829,974	-				-0.1
5,830,088	-		PP_5110	0.15	-0.3
5,830,283	-		PP_5110	0.44	-1.9