Strain Fitness in Pseudomonas putida KT2440 around PP_4857

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4855 and PP_4856 are separated by 66 nucleotidesPP_4856 and PP_4857 are separated by 39 nucleotidesPP_4857 and PP_4858 are separated by 340 nucleotidesPP_4858 and PP_4859 are separated by 122 nucleotides PP_4855: PP_4855 - Osmotically-inducible lipoprotein OsmE, at 5,521,852 to 5,522,193 _4855 PP_4856: PP_4856 - Ferritin, Dps family protein, at 5,522,260 to 5,522,766 _4856 PP_4857: PP_4857 - uncharacterized protein YhjG, at 5,522,806 to 5,524,872 _4857 PP_4858: PP_4858 - conserved exported protein of unknown function, at 5,525,213 to 5,525,710 _4858 PP_4859: PP_4859 - Transcriptional regulator, TetR family, at 5,525,833 to 5,526,468 _4859 Position (kb) 5522 5523 5524 5525Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5521.855 kb on + strandat 5521.855 kb on + strandat 5521.855 kb on + strandat 5521.855 kb on + strandat 5521.856 kb on - strandat 5521.856 kb on - strandat 5521.856 kb on - strandat 5521.933 kb on + strand, within PP_4855at 5521.934 kb on - strand, within PP_4855at 5521.934 kb on - strand, within PP_4855at 5521.980 kb on + strand, within PP_4855at 5521.981 kb on - strand, within PP_4855at 5522.062 kb on + strand, within PP_4855at 5522.062 kb on + strand, within PP_4855at 5522.062 kb on + strand, within PP_4855at 5522.063 kb on - strand, within PP_4855at 5522.095 kb on + strand, within PP_4855at 5522.098 kb on + strand, within PP_4855at 5522.099 kb on - strand, within PP_4855at 5522.099 kb on - strand, within PP_4855at 5522.099 kb on - strand, within PP_4855at 5522.099 kb on - strand, within PP_4855at 5522.099 kb on - strand, within PP_4855at 5522.099 kb on - strand, within PP_4855at 5522.191 kb on + strandat 5522.231 kb on + strandat 5522.231 kb on + strandat 5522.320 kb on + strand, within PP_4856at 5522.355 kb on + strand, within PP_4856at 5522.355 kb on + strand, within PP_4856at 5522.395 kb on + strand, within PP_4856at 5522.395 kb on + strand, within PP_4856at 5522.395 kb on + strand, within PP_4856at 5522.395 kb on + strand, within PP_4856at 5522.396 kb on - strand, within PP_4856at 5522.396 kb on - strand, within PP_4856at 5522.396 kb on - strand, within PP_4856at 5522.407 kb on + strand, within PP_4856at 5522.407 kb on + strand, within PP_4856at 5522.572 kb on + strand, within PP_4856at 5522.572 kb on + strand, within PP_4856at 5522.573 kb on - strand, within PP_4856at 5522.662 kb on + strand, within PP_4856at 5522.662 kb on + strand, within PP_4856at 5522.662 kb on + strand, within PP_4856at 5522.663 kb on - strand, within PP_4856at 5522.739 kb on + strandat 5522.739 kb on + strandat 5522.740 kb on - strandat 5522.740 kb on - strandat 5522.740 kb on - strandat 5522.808 kb on - strandat 5523.026 kb on + strand, within PP_4857at 5523.027 kb on - strand, within PP_4857at 5523.027 kb on - strand, within PP_4857at 5523.125 kb on + strand, within PP_4857at 5523.126 kb on - strand, within PP_4857at 5523.126 kb on - strand, within PP_4857at 5523.165 kb on + strand, within PP_4857at 5523.251 kb on + strand, within PP_4857at 5523.251 kb on + strand, within PP_4857at 5523.251 kb on + strand, within PP_4857at 5523.251 kb on + strand, within PP_4857at 5523.251 kb on + strand, within PP_4857at 5523.252 kb on - strand, within PP_4857at 5523.252 kb on - strand, within PP_4857at 5523.252 kb on - strand, within PP_4857at 5523.252 kb on - strand, within PP_4857at 5523.429 kb on + strand, within PP_4857at 5523.565 kb on + strand, within PP_4857at 5523.565 kb on + strand, within PP_4857at 5523.566 kb on - strand, within PP_4857at 5523.831 kb on + strand, within PP_4857at 5523.832 kb on - strand, within PP_4857at 5523.871 kb on + strand, within PP_4857at 5523.871 kb on + strand, within PP_4857at 5523.871 kb on + strand, within PP_4857at 5523.871 kb on + strand, within PP_4857at 5523.871 kb on + strand, within PP_4857at 5523.871 kb on + strand, within PP_4857at 5523.871 kb on + strand, within PP_4857at 5523.871 kb on + strand, within PP_4857at 5523.871 kb on + strand, within PP_4857at 5523.871 kb on + strand, within PP_4857at 5523.871 kb on + strand, within PP_4857at 5523.871 kb on + strand, within PP_4857at 5523.871 kb on + strand, within PP_4857at 5523.871 kb on + strand, within PP_4857at 5523.871 kb on + strand, within PP_4857at 5523.872 kb on - strand, within PP_4857at 5523.872 kb on - strand, within PP_4857at 5523.872 kb on - strand, within PP_4857at 5523.872 kb on - strand, within PP_4857at 5523.872 kb on - strand, within PP_4857at 5523.872 kb on - strand, within PP_4857at 5523.872 kb on - strand, within PP_4857at 5523.873 kb on + strand, within PP_4857at 5523.873 kb on + strand, within PP_4857at 5523.873 kb on + strand, within PP_4857at 5523.873 kb on + strand, within PP_4857at 5523.873 kb on + strand, within PP_4857at 5523.874 kb on - strand, within PP_4857at 5523.874 kb on - strand, within PP_4857at 5523.908 kb on + strand, within PP_4857at 5523.909 kb on - strand, within PP_4857at 5523.909 kb on - strand, within PP_4857at 5523.949 kb on + strand, within PP_4857at 5523.950 kb on - strand, within PP_4857at 5523.969 kb on - strand, within PP_4857at 5524.209 kb on - strand, within PP_4857at 5524.209 kb on - strand, within PP_4857at 5524.238 kb on + strand, within PP_4857at 5524.238 kb on + strand, within PP_4857at 5524.238 kb on + strand, within PP_4857at 5524.238 kb on + strand, within PP_4857at 5524.238 kb on + strand, within PP_4857at 5524.239 kb on - strand, within PP_4857at 5524.519 kb on + strand, within PP_4857at 5524.690 kb on - strandat 5524.801 kb on + strandat 5524.801 kb on + strandat 5524.802 kb on - strandat 5524.802 kb on - strandat 5524.802 kb on - strandat 5524.824 kb on + strandat 5524.824 kb on + strandat 5524.825 kb on - strandat 5524.877 kb on + strandat 5524.878 kb on - strandat 5524.878 kb on - strandat 5524.926 kb on - strandat 5524.926 kb on - strandat 5524.973 kb on + strandat 5525.031 kb on - strandat 5525.083 kb on + strandat 5525.084 kb on - strandat 5525.102 kb on + strandat 5525.103 kb on - strandat 5525.108 kb on + strandat 5525.108 kb on + strandat 5525.109 kb on - strandat 5525.121 kb on + strandat 5525.122 kb on - strandat 5525.162 kb on + strandat 5525.162 kb on + strandat 5525.163 kb on - strandat 5525.796 kb on + strandat 5525.858 kb on + strandat 5525.858 kb on + strandat 5525.858 kb on + strandat 5525.859 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
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5,521,855 + -0.0
5,521,855 + -0.2
5,521,855 + -0.6
5,521,855 + -0.7
5,521,856 - +0.6
5,521,856 - +0.4
5,521,856 - +0.5
5,521,933 + PP_4855 0.24 +0.7
5,521,934 - PP_4855 0.24 -0.4
5,521,934 - PP_4855 0.24 -0.8
5,521,980 + PP_4855 0.37 -0.3
5,521,981 - PP_4855 0.38 -0.3
5,522,062 + PP_4855 0.61 +0.3
5,522,062 + PP_4855 0.61 +0.0
5,522,062 + PP_4855 0.61 +0.0
5,522,063 - PP_4855 0.62 +0.1
5,522,095 + PP_4855 0.71 -1.6
5,522,098 + PP_4855 0.72 -0.3
5,522,099 - PP_4855 0.72 -0.5
5,522,099 - PP_4855 0.72 -0.6
5,522,099 - PP_4855 0.72 -1.1
5,522,099 - PP_4855 0.72 +2.7
5,522,099 - PP_4855 0.72 -0.5
5,522,099 - PP_4855 0.72 +0.9
5,522,191 + -1.0
5,522,231 + -1.7
5,522,231 + -0.9
5,522,320 + PP_4856 0.12 +0.7
5,522,355 + PP_4856 0.19 +0.2
5,522,355 + PP_4856 0.19 -1.6
5,522,395 + PP_4856 0.27 +0.6
5,522,395 + PP_4856 0.27 -0.4
5,522,395 + PP_4856 0.27 +0.7
5,522,395 + PP_4856 0.27 +0.6
5,522,396 - PP_4856 0.27 +0.1
5,522,396 - PP_4856 0.27 -0.6
5,522,396 - PP_4856 0.27 +1.2
5,522,407 + PP_4856 0.29 -0.6
5,522,407 + PP_4856 0.29 -0.3
5,522,572 + PP_4856 0.62 -0.1
5,522,572 + PP_4856 0.62 +0.2
5,522,573 - PP_4856 0.62 -0.7
5,522,662 + PP_4856 0.79 +0.8
5,522,662 + PP_4856 0.79 +0.6
5,522,662 + PP_4856 0.79 +0.6
5,522,663 - PP_4856 0.79 -1.4
5,522,739 + +0.8
5,522,739 + -1.4
5,522,740 - -0.1
5,522,740 - +1.7
5,522,740 - +0.5
5,522,808 - +0.1
5,523,026 + PP_4857 0.11 +0.4
5,523,027 - PP_4857 0.11 +0.4
5,523,027 - PP_4857 0.11 +1.2
5,523,125 + PP_4857 0.15 +0.1
5,523,126 - PP_4857 0.15 +0.2
5,523,126 - PP_4857 0.15 -1.3
5,523,165 + PP_4857 0.17 -0.4
5,523,251 + PP_4857 0.22 +0.0
5,523,251 + PP_4857 0.22 -1.4
5,523,251 + PP_4857 0.22 -0.5
5,523,251 + PP_4857 0.22 -0.4
5,523,251 + PP_4857 0.22 -1.3
5,523,252 - PP_4857 0.22 -1.3
5,523,252 - PP_4857 0.22 +0.3
5,523,252 - PP_4857 0.22 -1.4
5,523,252 - PP_4857 0.22 +0.1
5,523,429 + PP_4857 0.30 +0.2
5,523,565 + PP_4857 0.37 -0.5
5,523,565 + PP_4857 0.37 -0.5
5,523,566 - PP_4857 0.37 -1.5
5,523,831 + PP_4857 0.50 +0.2
5,523,832 - PP_4857 0.50 +0.5
5,523,871 + PP_4857 0.52 -0.6
5,523,871 + PP_4857 0.52 -0.5
5,523,871 + PP_4857 0.52 -0.7
5,523,871 + PP_4857 0.52 -1.1
5,523,871 + PP_4857 0.52 +0.1
5,523,871 + PP_4857 0.52 -0.3
5,523,871 + PP_4857 0.52 -0.8
5,523,871 + PP_4857 0.52 -1.8
5,523,871 + PP_4857 0.52 +1.3
5,523,871 + PP_4857 0.52 -0.5
5,523,871 + PP_4857 0.52 -0.3
5,523,871 + PP_4857 0.52 +1.2
5,523,871 + PP_4857 0.52 -1.1
5,523,871 + PP_4857 0.52 -0.2
5,523,871 + PP_4857 0.52 -0.1
5,523,872 - PP_4857 0.52 -0.2
5,523,872 - PP_4857 0.52 -0.0
5,523,872 - PP_4857 0.52 -0.2
5,523,872 - PP_4857 0.52 -0.4
5,523,872 - PP_4857 0.52 -0.6
5,523,872 - PP_4857 0.52 -1.6
5,523,872 - PP_4857 0.52 -0.7
5,523,873 + PP_4857 0.52 +0.8
5,523,873 + PP_4857 0.52 +1.4
5,523,873 + PP_4857 0.52 -0.7
5,523,873 + PP_4857 0.52 -3.0
5,523,873 + PP_4857 0.52 -1.0
5,523,874 - PP_4857 0.52 -1.1
5,523,874 - PP_4857 0.52 +0.1
5,523,908 + PP_4857 0.53 -0.2
5,523,909 - PP_4857 0.53 -0.5
5,523,909 - PP_4857 0.53 -0.3
5,523,949 + PP_4857 0.55 -1.2
5,523,950 - PP_4857 0.55 -0.1
5,523,969 - PP_4857 0.56 -0.7
5,524,209 - PP_4857 0.68 -0.3
5,524,209 - PP_4857 0.68 +0.4
5,524,238 + PP_4857 0.69 -0.6
5,524,238 + PP_4857 0.69 -0.5
5,524,238 + PP_4857 0.69 -1.2
5,524,238 + PP_4857 0.69 -0.0
5,524,238 + PP_4857 0.69 -0.4
5,524,239 - PP_4857 0.69 +0.4
5,524,519 + PP_4857 0.83 -0.3
5,524,690 - +0.6
5,524,801 + +0.1
5,524,801 + -0.3
5,524,802 - -0.0
5,524,802 - -0.4
5,524,802 - +0.4
5,524,824 + -0.6
5,524,824 + -0.8
5,524,825 - +0.3
5,524,877 + +1.7
5,524,878 - -1.0
5,524,878 - +0.1
5,524,926 - +2.4
5,524,926 - -0.8
5,524,973 + -1.0
5,525,031 - +1.0
5,525,083 + -0.6
5,525,084 - -0.9
5,525,102 + +2.4
5,525,103 - -0.5
5,525,108 + -1.1
5,525,108 + -0.9
5,525,109 - -0.7
5,525,121 + -2.9
5,525,122 - +0.7
5,525,162 + +0.3
5,525,162 + -0.8
5,525,163 - -0.9
5,525,796 + -0.1
5,525,858 + +0.1
5,525,858 + -0.7
5,525,858 + +1.7
5,525,859 - -0.1

Or see this region's nucleotide sequence