Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4668 and PP_4669 are separated by 125 nucleotides PP_4669 and PP_4670 overlap by 23 nucleotides
PP_4668: PP_4668 - Transcriptional regulator, LysR family, at 5,294,519 to 5,295,469
_4668
PP_4669: PP_4669 - OmpA family protein, at 5,295,595 to 5,296,113
_4669
PP_4670: PP_4670 - diguanylate cyclase, at 5,296,091 to 5,297,362
_4670
Position (kb) 5295
5296
5297 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5294.633 kb on + strand, within PP_4668 at 5294.633 kb on + strand, within PP_4668 at 5294.633 kb on + strand, within PP_4668 at 5294.634 kb on - strand, within PP_4668 at 5294.634 kb on - strand, within PP_4668 at 5294.680 kb on + strand, within PP_4668 at 5294.681 kb on - strand, within PP_4668 at 5294.751 kb on - strand, within PP_4668 at 5294.880 kb on + strand, within PP_4668 at 5294.881 kb on - strand, within PP_4668 at 5294.881 kb on - strand, within PP_4668 at 5294.881 kb on - strand, within PP_4668 at 5295.005 kb on + strand, within PP_4668 at 5295.005 kb on + strand, within PP_4668 at 5295.005 kb on + strand, within PP_4668 at 5295.005 kb on + strand, within PP_4668 at 5295.006 kb on - strand, within PP_4668 at 5295.006 kb on - strand, within PP_4668 at 5295.006 kb on - strand, within PP_4668 at 5295.006 kb on - strand, within PP_4668 at 5295.006 kb on - strand at 5295.006 kb on - strand, within PP_4668 at 5295.044 kb on + strand, within PP_4668 at 5295.045 kb on - strand, within PP_4668 at 5295.045 kb on - strand, within PP_4668 at 5295.122 kb on + strand, within PP_4668 at 5295.122 kb on + strand, within PP_4668 at 5295.123 kb on - strand, within PP_4668 at 5295.123 kb on - strand, within PP_4668 at 5295.159 kb on - strand, within PP_4668 at 5295.255 kb on + strand, within PP_4668 at 5295.255 kb on + strand, within PP_4668 at 5295.341 kb on + strand, within PP_4668 at 5295.341 kb on + strand, within PP_4668 at 5295.341 kb on + strand, within PP_4668 at 5295.342 kb on - strand, within PP_4668 at 5295.342 kb on - strand, within PP_4668 at 5295.393 kb on - strand at 5295.498 kb on + strand at 5295.499 kb on - strand at 5295.561 kb on - strand at 5295.570 kb on + strand at 5295.570 kb on + strand at 5295.571 kb on - strand at 5295.600 kb on - strand at 5295.776 kb on + strand, within PP_4669 at 5295.776 kb on + strand, within PP_4669 at 5295.776 kb on + strand, within PP_4669 at 5295.777 kb on - strand, within PP_4669 at 5296.073 kb on - strand at 5296.073 kb on - strand at 5296.073 kb on - strand at 5296.173 kb on + strand at 5296.173 kb on + strand at 5296.173 kb on + strand at 5296.230 kb on + strand, within PP_4670 at 5296.233 kb on + strand, within PP_4670 at 5296.234 kb on - strand, within PP_4670 at 5296.240 kb on + strand, within PP_4670 at 5296.346 kb on - strand, within PP_4670 at 5296.448 kb on + strand, within PP_4670 at 5296.448 kb on + strand, within PP_4670 at 5296.448 kb on + strand, within PP_4670 at 5296.448 kb on + strand, within PP_4670 at 5296.448 kb on + strand, within PP_4670 at 5296.449 kb on - strand, within PP_4670 at 5296.449 kb on - strand, within PP_4670 at 5296.660 kb on + strand, within PP_4670 at 5296.661 kb on - strand, within PP_4670 at 5296.814 kb on - strand, within PP_4670 at 5296.839 kb on + strand, within PP_4670 at 5296.938 kb on - strand, within PP_4670 at 5296.940 kb on - strand, within PP_4670 at 5296.940 kb on - strand, within PP_4670
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. remove 5,294,633 + PP_4668 0.12 -0.4 5,294,633 + PP_4668 0.12 +0.2 5,294,633 + PP_4668 0.12 -0.1 5,294,634 - PP_4668 0.12 +0.7 5,294,634 - PP_4668 0.12 +0.4 5,294,680 + PP_4668 0.17 -1.3 5,294,681 - PP_4668 0.17 +0.2 5,294,751 - PP_4668 0.24 +0.2 5,294,880 + PP_4668 0.38 -0.1 5,294,881 - PP_4668 0.38 +1.3 5,294,881 - PP_4668 0.38 -1.5 5,294,881 - PP_4668 0.38 -0.3 5,295,005 + PP_4668 0.51 -2.0 5,295,005 + PP_4668 0.51 -0.4 5,295,005 + PP_4668 0.51 -1.1 5,295,005 + PP_4668 0.51 +1.2 5,295,006 - PP_4668 0.51 +0.9 5,295,006 - PP_4668 0.51 +0.5 5,295,006 - PP_4668 0.51 -0.5 5,295,006 - PP_4668 0.51 -0.3 5,295,006 - +2.4 5,295,006 - PP_4668 0.51 -0.0 5,295,044 + PP_4668 0.55 +1.5 5,295,045 - PP_4668 0.55 +1.3 5,295,045 - PP_4668 0.55 -0.4 5,295,122 + PP_4668 0.63 -0.4 5,295,122 + PP_4668 0.63 -0.1 5,295,123 - PP_4668 0.64 +0.6 5,295,123 - PP_4668 0.64 -0.3 5,295,159 - PP_4668 0.67 +1.1 5,295,255 + PP_4668 0.77 -0.0 5,295,255 + PP_4668 0.77 -0.2 5,295,341 + PP_4668 0.86 +0.7 5,295,341 + PP_4668 0.86 -1.3 5,295,341 + PP_4668 0.86 -0.2 5,295,342 - PP_4668 0.87 +4.6 5,295,342 - PP_4668 0.87 -0.0 5,295,393 - -0.9 5,295,498 + -0.0 5,295,499 - -0.2 5,295,561 - +0.6 5,295,570 + +0.0 5,295,570 + +1.7 5,295,571 - -0.5 5,295,600 - -1.6 5,295,776 + PP_4669 0.35 +0.2 5,295,776 + PP_4669 0.35 -0.1 5,295,776 + PP_4669 0.35 -1.1 5,295,777 - PP_4669 0.35 -1.2 5,296,073 - +1.2 5,296,073 - -0.1 5,296,073 - -1.5 5,296,173 + +0.2 5,296,173 + -1.9 5,296,173 + -0.8 5,296,230 + PP_4670 0.11 +0.5 5,296,233 + PP_4670 0.11 +0.1 5,296,234 - PP_4670 0.11 -0.4 5,296,240 + PP_4670 0.12 -0.3 5,296,346 - PP_4670 0.20 -0.1 5,296,448 + PP_4670 0.28 -0.5 5,296,448 + PP_4670 0.28 -1.4 5,296,448 + PP_4670 0.28 -0.7 5,296,448 + PP_4670 0.28 +0.3 5,296,448 + PP_4670 0.28 -0.8 5,296,449 - PP_4670 0.28 -0.5 5,296,449 - PP_4670 0.28 +0.8 5,296,660 + PP_4670 0.45 -1.5 5,296,661 - PP_4670 0.45 -0.7 5,296,814 - PP_4670 0.57 -1.5 5,296,839 + PP_4670 0.59 +1.2 5,296,938 - PP_4670 0.67 +0.4 5,296,940 - PP_4670 0.67 +0.6 5,296,940 - PP_4670 0.67 +0.7
Or see this region's nucleotide sequence