Strain Fitness in Pseudomonas putida KT2440 around PP_4052

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4051 and PP_4052 overlap by 4 nucleotidesPP_4052 and PP_4053 overlap by 4 nucleotides PP_4051: PP_4051 - malto-oligosyltrehalose trehalohydrolase, at 4,566,332 to 4,568,074 _4051 PP_4052: PP_4052 - 4-alpha-glucanotransferase, at 4,568,071 to 4,570,140 _4052 PP_4053: PP_4053 - maltooligosyl trehalose synthase, at 4,570,137 to 4,572,911 _4053 Position (kb) 4568 4569 4570 4571Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4567.221 kb on - strand, within PP_4051at 4567.289 kb on + strand, within PP_4051at 4567.289 kb on + strand, within PP_4051at 4567.290 kb on - strand, within PP_4051at 4567.292 kb on + strand, within PP_4051at 4567.292 kb on + strand, within PP_4051at 4567.292 kb on + strand, within PP_4051at 4567.293 kb on - strand, within PP_4051at 4567.293 kb on - strand, within PP_4051at 4568.027 kb on + strandat 4568.028 kb on - strandat 4568.294 kb on + strand, within PP_4052at 4568.321 kb on - strand, within PP_4052at 4568.548 kb on + strand, within PP_4052at 4568.548 kb on + strand, within PP_4052at 4568.549 kb on - strand, within PP_4052at 4568.646 kb on + strand, within PP_4052at 4568.689 kb on + strand, within PP_4052at 4568.689 kb on + strand, within PP_4052at 4568.689 kb on + strand, within PP_4052at 4568.689 kb on + strand, within PP_4052at 4568.689 kb on + strand, within PP_4052at 4568.689 kb on + strand, within PP_4052at 4568.690 kb on - strand, within PP_4052at 4568.690 kb on - strand, within PP_4052at 4568.690 kb on - strand, within PP_4052at 4568.690 kb on - strand, within PP_4052at 4568.690 kb on - strand, within PP_4052at 4568.690 kb on - strand, within PP_4052at 4568.699 kb on - strand, within PP_4052at 4568.734 kb on + strand, within PP_4052at 4568.735 kb on - strand, within PP_4052at 4568.735 kb on - strand, within PP_4052at 4568.735 kb on - strand, within PP_4052at 4568.735 kb on - strand, within PP_4052at 4568.735 kb on - strand, within PP_4052at 4568.736 kb on + strand, within PP_4052at 4569.061 kb on + strand, within PP_4052at 4569.311 kb on + strand, within PP_4052at 4569.312 kb on - strand, within PP_4052at 4569.312 kb on - strand, within PP_4052at 4569.494 kb on - strand, within PP_4052at 4569.510 kb on - strand, within PP_4052at 4569.510 kb on - strand, within PP_4052at 4569.874 kb on + strand, within PP_4052at 4569.874 kb on + strand, within PP_4052at 4570.052 kb on + strandat 4570.062 kb on - strandat 4570.202 kb on - strandat 4570.246 kb on - strandat 4570.246 kb on - strandat 4570.246 kb on - strandat 4570.290 kb on + strandat 4570.291 kb on - strandat 4570.291 kb on - strandat 4570.307 kb on + strandat 4570.420 kb on + strand, within PP_4053at 4570.421 kb on - strand, within PP_4053at 4570.480 kb on - strand, within PP_4053at 4570.563 kb on + strand, within PP_4053at 4570.591 kb on + strand, within PP_4053at 4570.592 kb on - strand, within PP_4053at 4570.638 kb on + strand, within PP_4053at 4571.100 kb on + strand, within PP_4053at 4571.129 kb on + strand, within PP_4053at 4571.130 kb on - strand, within PP_4053

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
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4,567,221 - PP_4051 0.51 -0.5
4,567,289 + PP_4051 0.55 -1.3
4,567,289 + PP_4051 0.55 +0.1
4,567,290 - PP_4051 0.55 +4.0
4,567,292 + PP_4051 0.55 +0.9
4,567,292 + PP_4051 0.55 +1.4
4,567,292 + PP_4051 0.55 +0.5
4,567,293 - PP_4051 0.55 +0.6
4,567,293 - PP_4051 0.55 -0.3
4,568,027 + +1.8
4,568,028 - +1.6
4,568,294 + PP_4052 0.11 +0.9
4,568,321 - PP_4052 0.12 +2.0
4,568,548 + PP_4052 0.23 +0.4
4,568,548 + PP_4052 0.23 +0.3
4,568,549 - PP_4052 0.23 +0.0
4,568,646 + PP_4052 0.28 +0.7
4,568,689 + PP_4052 0.30 -0.2
4,568,689 + PP_4052 0.30 +0.9
4,568,689 + PP_4052 0.30 -0.2
4,568,689 + PP_4052 0.30 -1.5
4,568,689 + PP_4052 0.30 -0.1
4,568,689 + PP_4052 0.30 -0.2
4,568,690 - PP_4052 0.30 +2.6
4,568,690 - PP_4052 0.30 +0.0
4,568,690 - PP_4052 0.30 -1.1
4,568,690 - PP_4052 0.30 +0.9
4,568,690 - PP_4052 0.30 -0.6
4,568,690 - PP_4052 0.30 -0.4
4,568,699 - PP_4052 0.30 +0.6
4,568,734 + PP_4052 0.32 -0.0
4,568,735 - PP_4052 0.32 +1.4
4,568,735 - PP_4052 0.32 +0.9
4,568,735 - PP_4052 0.32 -0.4
4,568,735 - PP_4052 0.32 -0.2
4,568,735 - PP_4052 0.32 +1.6
4,568,736 + PP_4052 0.32 -1.6
4,569,061 + PP_4052 0.48 -1.2
4,569,311 + PP_4052 0.60 +0.2
4,569,312 - PP_4052 0.60 +0.8
4,569,312 - PP_4052 0.60 -0.1
4,569,494 - PP_4052 0.69 +0.6
4,569,510 - PP_4052 0.70 -1.3
4,569,510 - PP_4052 0.70 +0.3
4,569,874 + PP_4052 0.87 +1.0
4,569,874 + PP_4052 0.87 -2.1
4,570,052 + -1.3
4,570,062 - -1.0
4,570,202 - +0.7
4,570,246 - +0.8
4,570,246 - +0.5
4,570,246 - +0.7
4,570,290 + -1.1
4,570,291 - +0.2
4,570,291 - +1.4
4,570,307 + +1.4
4,570,420 + PP_4053 0.10 -1.4
4,570,421 - PP_4053 0.10 -1.0
4,570,480 - PP_4053 0.12 +0.7
4,570,563 + PP_4053 0.15 +0.5
4,570,591 + PP_4053 0.16 -0.9
4,570,592 - PP_4053 0.16 +1.2
4,570,638 + PP_4053 0.18 +0.3
4,571,100 + PP_4053 0.35 -1.2
4,571,129 + PP_4053 0.36 -0.3
4,571,130 - PP_4053 0.36 +0.4

Or see this region's nucleotide sequence