Strain Fitness in Pseudomonas putida KT2440 around PP_4013

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
4,524,375	+				-0.1
4,524,376	-				+0.1
4,524,391	+				+1.4
4,524,391	+				-0.4
4,524,444	+				-1.2
4,524,444	+				+0.5
4,524,471	-				-0.2
4,524,471	-				+2.0
4,524,483	-				+0.6
4,524,536	+				+0.6
4,524,537	-				-0.5
4,524,777	+		PP_4013	0.47	-0.6
4,524,777	+		PP_4013	0.47	-0.0
4,524,778	-		PP_4013	0.47	-0.2
4,524,778	-		PP_4013	0.47	-1.8
4,524,778	-		PP_4013	0.47	+0.8
4,524,783	+		PP_4013	0.48	-0.8
4,524,784	-		PP_4013	0.49	+0.1
4,524,875	+		PP_4013	0.69	-0.8
4,524,967	-				-1.9
4,525,055	+				+3.0