Strain Fitness in Pseudomonas putida KT2440 around PP_3806

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3805 and PP_3806 are separated by 26 nucleotidesPP_3806 and PP_3807 are separated by 56 nucleotidesPP_3807 and PP_3808 overlap by 4 nucleotides PP_3805: PP_3805 - lipoprotein required for swarming, at 4,333,144 to 4,334,196 _3805 PP_3806: PP_3806 - Hydrolase, isochorismatase family, at 4,334,223 to 4,334,774 _3806 PP_3807: PP_3807 - Thioesterase, at 4,334,831 to 4,335,550 _3807 PP_3808: PP_3808 - Antibiotic synthesis protein MbtH, at 4,335,547 to 4,335,768 _3808 Position (kb) 4334 4335Strain fitness (log2 ratio) -2 -1 0 1 2at 4333.372 kb on - strand, within PP_3805at 4333.372 kb on - strand, within PP_3805at 4333.554 kb on - strand, within PP_3805at 4333.568 kb on + strand, within PP_3805at 4333.568 kb on + strand, within PP_3805at 4333.568 kb on + strand, within PP_3805at 4333.569 kb on - strand, within PP_3805at 4333.607 kb on + strand, within PP_3805at 4333.607 kb on + strand, within PP_3805at 4333.607 kb on + strand, within PP_3805at 4333.607 kb on + strand, within PP_3805at 4333.608 kb on - strand, within PP_3805at 4333.608 kb on - strand, within PP_3805at 4333.608 kb on - strand, within PP_3805at 4333.661 kb on + strand, within PP_3805at 4333.787 kb on + strand, within PP_3805at 4333.787 kb on + strand, within PP_3805at 4333.838 kb on + strand, within PP_3805at 4333.838 kb on + strand, within PP_3805at 4333.896 kb on + strand, within PP_3805at 4333.896 kb on + strand, within PP_3805at 4333.897 kb on - strand, within PP_3805at 4333.897 kb on - strand, within PP_3805at 4334.102 kb on - strandat 4334.245 kb on + strandat 4334.322 kb on + strand, within PP_3806at 4334.322 kb on + strand, within PP_3806at 4334.322 kb on + strand, within PP_3806at 4334.575 kb on - strand, within PP_3806at 4334.801 kb on + strandat 4335.051 kb on + strand, within PP_3807at 4335.051 kb on + strand, within PP_3807at 4335.051 kb on + strand, within PP_3807at 4335.052 kb on - strand, within PP_3807at 4335.052 kb on - strand, within PP_3807at 4335.207 kb on + strand, within PP_3807at 4335.207 kb on + strand, within PP_3807at 4335.208 kb on - strand, within PP_3807at 4335.208 kb on - strand, within PP_3807at 4335.223 kb on + strand, within PP_3807at 4335.339 kb on + strand, within PP_3807at 4335.339 kb on + strand, within PP_3807at 4335.339 kb on + strand, within PP_3807at 4335.339 kb on + strand, within PP_3807at 4335.339 kb on + strand, within PP_3807at 4335.340 kb on - strand, within PP_3807at 4335.447 kb on - strand, within PP_3807at 4335.455 kb on + strand, within PP_3807at 4335.456 kb on - strand, within PP_3807at 4335.496 kb on - strandat 4335.520 kb on - strandat 4335.620 kb on + strand, within PP_3808at 4335.704 kb on + strand, within PP_3808

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
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4,333,372 - PP_3805 0.22 +0.0
4,333,372 - PP_3805 0.22 -2.0
4,333,554 - PP_3805 0.39 -0.2
4,333,568 + PP_3805 0.40 -0.8
4,333,568 + PP_3805 0.40 +0.8
4,333,568 + PP_3805 0.40 +0.8
4,333,569 - PP_3805 0.40 -0.2
4,333,607 + PP_3805 0.44 +0.2
4,333,607 + PP_3805 0.44 -0.3
4,333,607 + PP_3805 0.44 +0.6
4,333,607 + PP_3805 0.44 -0.4
4,333,608 - PP_3805 0.44 -1.1
4,333,608 - PP_3805 0.44 -0.5
4,333,608 - PP_3805 0.44 +2.0
4,333,661 + PP_3805 0.49 -1.7
4,333,787 + PP_3805 0.61 -0.7
4,333,787 + PP_3805 0.61 -0.6
4,333,838 + PP_3805 0.66 -0.9
4,333,838 + PP_3805 0.66 +0.1
4,333,896 + PP_3805 0.71 +0.9
4,333,896 + PP_3805 0.71 -0.4
4,333,897 - PP_3805 0.72 -0.3
4,333,897 - PP_3805 0.72 -0.1
4,334,102 - -0.0
4,334,245 + +0.0
4,334,322 + PP_3806 0.18 +0.4
4,334,322 + PP_3806 0.18 -0.7
4,334,322 + PP_3806 0.18 -0.9
4,334,575 - PP_3806 0.64 -0.6
4,334,801 + -0.6
4,335,051 + PP_3807 0.31 +1.2
4,335,051 + PP_3807 0.31 +1.0
4,335,051 + PP_3807 0.31 +1.8
4,335,052 - PP_3807 0.31 +2.0
4,335,052 - PP_3807 0.31 +1.0
4,335,207 + PP_3807 0.52 -1.0
4,335,207 + PP_3807 0.52 -0.1
4,335,208 - PP_3807 0.52 +0.4
4,335,208 - PP_3807 0.52 -0.1
4,335,223 + PP_3807 0.54 +1.4
4,335,339 + PP_3807 0.71 +0.2
4,335,339 + PP_3807 0.71 +0.6
4,335,339 + PP_3807 0.71 -0.8
4,335,339 + PP_3807 0.71 +1.7
4,335,339 + PP_3807 0.71 -0.1
4,335,340 - PP_3807 0.71 +0.5
4,335,447 - PP_3807 0.86 -0.4
4,335,455 + PP_3807 0.87 +0.5
4,335,456 - PP_3807 0.87 +0.0
4,335,496 - -1.3
4,335,520 - -0.5
4,335,620 + PP_3808 0.33 +0.5
4,335,704 + PP_3808 0.71 +0.1

Or see this region's nucleotide sequence