Strain Fitness in Pseudomonas putida KT2440 around PP_1834

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
2,057,602	+		PP_1832	0.66	+0.9
2,057,602	+		PP_1832	0.66	-0.0
2,057,602	+		PP_1832	0.66	+1.1
2,057,603	-		PP_1832	0.66	+4.0
2,057,676	+		PP_1832	0.80	-0.0
2,057,676	+		PP_1832	0.80	+1.0
2,057,676	+		PP_1832	0.80	+0.1
2,057,676	+		PP_1832	0.80	-0.9
2,057,677	-		PP_1832	0.80	-0.9
2,057,677	-		PP_1832	0.80	+1.6
2,057,705	-		PP_1832	0.85	-0.9
2,057,705	-		PP_1832	0.85	+0.3
2,057,705	-		PP_1832	0.85	-2.0
2,057,705	-		PP_1832	0.85	+0.2
2,057,783	-				-1.4
2,057,821	+				+0.1
2,057,822	-				+0.7
2,057,822	-				-0.0
2,057,822	-				+0.0
2,057,842	-				-0.9
2,057,842	-				-1.6
2,057,865	+				+1.1
2,057,865	+				+0.4
2,057,866	-				-0.2
2,057,866	-				+1.2
2,057,904	+				+0.2
2,057,904	+				+0.6
2,057,904	+				-0.3
2,057,904	+				-0.3
2,057,905	-				-1.8
2,057,905	-				-0.5
2,057,905	-				+0.5
2,057,920	-				+0.3
2,058,051	+		PP_1833	0.46	-0.7
2,058,051	+		PP_1833	0.46	+0.1
2,058,098	-		PP_1833	0.61	-0.3
2,058,104	+		PP_1833	0.63	+0.6
2,058,104	+		PP_1833	0.63	+0.1
2,058,130	+		PP_1833	0.72	-0.0
2,058,184	+				+1.4
2,058,267	+				+1.8
2,058,377	+				-0.9
2,058,377	+				-0.5
2,058,377	+				-0.1
2,058,377	+				+1.1
2,058,377	+				-1.2
2,058,433	+				+0.8
2,058,433	+				-0.4
2,058,434	-				-0.9
2,058,434	-				+0.1
2,058,450	+				+0.5
2,058,450	+				-1.1
2,058,451	-				-1.4
2,058,451	-				-0.6
2,058,451	-				+1.1
2,058,591	+		PP_1834	0.27	-0.2
2,058,591	+		PP_1834	0.27	-2.4
2,058,629	-		PP_1834	0.34	-2.6
2,058,629	-		PP_1834	0.34	-0.1
2,058,854	-		PP_1834	0.77	-0.7
2,059,133	-		PP_1835	0.18	+1.0
2,059,177	+		PP_1835	0.27	+0.3
2,059,177	+		PP_1835	0.27	+0.3
2,059,178	-		PP_1835	0.27	-1.2
2,059,179	-		PP_1835	0.27	+3.0
2,059,262	-		PP_1835	0.43	-1.4
2,059,262	-		PP_1835	0.43	+1.6
2,059,262	-		PP_1835	0.43	-0.9
2,059,262	-		PP_1835	0.43	-0.3
2,059,262	-		PP_1835	0.43	-0.9
2,059,315	-		PP_1835	0.53	+2.0
2,059,368	+		PP_1835	0.63	+1.3
2,059,369	-		PP_1835	0.63	+2.4
2,059,411	+		PP_1835	0.71	-1.5
2,059,411	+		PP_1835	0.71	-1.3
2,059,411	+		PP_1835	0.71	+4.0
2,059,411	+		PP_1835	0.71	-1.3
2,059,412	-		PP_1835	0.71	-0.6
2,059,412	-		PP_1835	0.71	+0.5
2,059,412	-		PP_1835	0.71	-0.1
2,059,412	-		PP_1835	0.71	+0.1
2,059,412	-		PP_1835	0.71	-0.6
2,059,491	-		PP_1835	0.86	-0.6
2,059,567	+				+0.3
2,059,610	-				+1.8
2,059,634	+				-1.4
2,059,895	-		PP_1836	0.22	+0.2