Strain Fitness in Pseudomonas putida KT2440 around PP_1745

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
1,944,204	-		PP_1743	0.82	+2.0
1,944,204	-		PP_1743	0.82	-0.5
1,944,329	+		PP_1743	0.90	+0.8
1,944,335	+				+0.5
1,944,336	-				+1.6
1,944,342	-				+2.4
1,944,497	+				+0.3
1,944,497	+				+0.8
1,944,497	+				-0.2
1,944,497	+				+3.0
1,944,498	-				-1.0
1,944,661	+				+0.6
1,944,662	-				-0.1
1,944,668	+				+0.5
1,944,668	+				+0.3
1,944,669	-				-0.5
1,944,749	-				+0.4
1,944,764	+				+1.2
1,944,764	+				+0.4
1,944,764	+				-1.2
1,944,764	+				+1.0
1,944,764	+				-0.7
1,944,764	+				-0.2
1,944,764	+				+1.1
1,944,765	-				+0.6
1,944,782	+		PP_1744	0.14	+0.4
1,944,782	+		PP_1744	0.14	+1.2
1,944,782	+		PP_1744	0.14	+0.0
1,944,782	+		PP_1744	0.14	-1.8
1,944,785	+				+4.0
1,944,785	+		PP_1744	0.16	+1.2
1,944,785	+		PP_1744	0.16	-0.4
1,944,786	-		PP_1744	0.16	-0.4
1,944,831	+		PP_1744	0.46	+0.2
1,944,898	+				+1.2
1,944,933	+				+4.0
1,944,992	-				-0.7
1,945,080	+				-1.2
1,945,081	-				-1.2
1,945,081	-				+0.3
1,945,306	+		PP_1745	0.23	+0.2
1,945,306	+		PP_1745	0.23	-0.9
1,945,309	-		PP_1745	0.23	+1.1
1,945,309	-		PP_1745	0.23	-0.4
1,945,309	-		PP_1745	0.23	-1.2
1,945,516	-		PP_1745	0.49	+2.4
1,945,516	-				+1.0
1,945,568	-		PP_1745	0.55	-0.7
1,945,568	-		PP_1745	0.55	-1.2
1,945,774	+		PP_1745	0.81	-0.2
1,945,774	+		PP_1745	0.81	-1.4
1,945,774	+		PP_1745	0.81	-1.0
1,945,774	+		PP_1745	0.81	-1.6
1,945,774	+		PP_1745	0.81	-1.7
1,945,774	+		PP_1745	0.81	-0.5
1,945,776	+		PP_1745	0.81	-0.4
1,945,777	-		PP_1745	0.81	+0.5
1,945,873	+				+1.6
1,945,874	-				+0.4
1,945,939	-				-1.5
1,945,939	-				-0.6
1,945,944	+				+0.6
1,945,944	+				-1.3
1,945,944	+				-0.1
1,945,944	+				+0.1
1,945,945	-				-1.7
1,945,945	-				-0.6
1,945,945	-				+0.4
1,945,945	-				+0.0
1,945,945	-				-0.1
1,945,945	-				+0.1
1,945,945	-				+1.0
1,945,948	+				-0.8
1,945,948	+				+0.5
1,945,949	-				+0.8
1,945,949	-				+0.1
1,945,949	-				+0.5
1,945,960	+				-0.4
1,945,961	-				-1.2
1,945,961	-				+0.6
1,945,961	-				+1.6
1,945,987	+				+4.0
1,945,988	-				+0.3
1,945,994	+				-1.7
1,945,995	-				-0.0
1,946,191	+		PP_1746	0.78	-1.3
1,946,356	-		PP_1747	0.49	-0.4
1,946,459	-				-0.1
1,946,492	-				-0.3
1,946,496	-				+0.6
1,946,506	+				+0.1
1,946,506	+				+1.1
1,946,556	+				+4.0
1,946,656	+				+0.5
1,946,657	-				+0.7
1,946,657	-				+0.3
1,946,704	-		PP_1748	0.13	+0.2
1,946,704	-		PP_1748	0.13	+0.2
1,946,804	-		PP_1748	0.21	-0.5
1,946,919	+		PP_1748	0.31	-0.2
1,946,919	+		PP_1748	0.31	+1.7
1,946,926	-		PP_1748	0.31	-0.9