Strain Fitness in Pseudomonas putida KT2440 around PP_1666

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
1,862,009	-				+0.1
1,862,155	+				+0.4
1,862,156	-				+1.6
1,862,200	+				-0.8
1,862,200	+				+0.0
1,862,200	+				-1.7
1,862,200	+				-1.0
1,862,200	+				-0.5
1,862,200	+				+0.4
1,862,200	+				+0.2
1,862,201	-				+1.0
1,862,201	-				-1.1
1,862,201	-				-0.2
1,862,201	-				+1.1
1,862,201	-				-0.9
1,862,202	+				+0.0
1,862,202	+				-0.5
1,862,203	-				+0.3
1,862,203	-				+0.3
1,862,281	+				+0.1
1,862,330	-				-0.5
1,862,397	-				-0.2
1,862,397	-				+3.0
1,862,397	-				+1.3
1,862,467	+		PP_1666	0.14	-0.0
1,862,468	-		PP_1666	0.14	+0.6
1,862,497	+		PP_1666	0.17	-1.5
1,862,497	+		PP_1666	0.17	-1.8
1,862,497	+		PP_1666	0.17	-1.4
1,862,497	+		PP_1666	0.17	-1.1
1,862,614	+		PP_1666	0.28	-0.3
1,862,615	-		PP_1666	0.28	-0.8
1,862,883	-		PP_1666	0.53	-2.0
1,862,907	+		PP_1666	0.55	+0.1
1,862,908	-		PP_1666	0.56	+0.9
1,862,908	-		PP_1666	0.56	-1.1
1,862,908	-		PP_1666	0.56	-0.6
1,863,056	+		PP_1666	0.69	+0.9
1,863,056	+		PP_1666	0.69	-1.3
1,863,056	+		PP_1666	0.69	-0.2
1,863,056	+		PP_1666	0.69	-0.5
1,863,057	-		PP_1666	0.69	-1.1
1,863,062	-		PP_1666	0.70	+0.4
1,863,123	-		PP_1666	0.76	-0.7
1,863,152	+		PP_1666	0.78	+0.8
1,863,202	+		PP_1666	0.83	-1.0
1,863,222	+		PP_1666	0.85	+0.5
1,863,222	+		PP_1666	0.85	-1.1
1,863,222	+		PP_1666	0.85	-0.2
1,863,223	-		PP_1666	0.85	+0.6
1,863,223	-		PP_1666	0.85	-1.0
1,863,223	-				+1.6
1,863,223	-		PP_1666	0.85	-1.2
1,863,380	+				+0.7
1,863,380	+				-0.7
1,863,456	-				-0.6
1,863,458	-				+1.3
1,863,469	+				-0.2
1,863,469	+				-1.1
1,863,469	+				+1.8
1,863,469	+				+0.9
1,863,469	+				-0.5
1,863,470	-				+0.1
1,863,470	-				+0.3
1,863,507	-		PP_1667	0.10	+0.1
1,863,799	+		PP_1667	0.38	+1.0
1,863,865	+		PP_1667	0.44	-0.2
1,863,866	-		PP_1667	0.44	+0.0
1,863,893	+		PP_1667	0.46	+1.5
1,863,893	+		PP_1667	0.46	-0.2
1,863,893	+		PP_1667	0.46	+0.2
1,863,894	-		PP_1667	0.46	+0.7
1,863,894	-		PP_1667	0.46	-0.7
1,863,894	-		PP_1667	0.46	-0.3
1,863,894	-		PP_1667	0.46	-1.0
1,864,052	+		PP_1667	0.61	-1.0
1,864,052	+		PP_1667	0.61	-0.8
1,864,053	-		PP_1667	0.61	-1.9
1,864,053	-		PP_1667	0.61	+0.1
1,864,053	-		PP_1667	0.61	-0.7
1,864,053	-		PP_1667	0.61	-0.4
1,864,134	-		PP_1667	0.69	+2.4
1,864,134	-		PP_1667	0.69	-0.0
1,864,256	-		PP_1667	0.80	-1.4