Strain Fitness in Pseudomonas putida KT2440 around PP_1573

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1570 and PP_1571 overlap by 8 nucleotidesPP_1571 and PP_1572 overlap by 4 nucleotidesPP_1572 and PP_1573 are separated by 65 nucleotidesPP_1573 and PP_1574 are separated by 8 nucleotidesPP_1574 and PP_1575 are separated by 62 nucleotidesPP_1575 and PP_1576 are separated by 61 nucleotides PP_1570: PP_1570 - Head-tail adaptor, at 1,762,843 to 1,763,184 _1570 PP_1571: PP_1571 - conserved protein of unknown function, at 1,763,177 to 1,763,662 _1571 PP_1572: PP_1572 - conserved protein of unknown function, at 1,763,659 to 1,764,027 _1572 PP_1573: PP_1573 - putative Major tail protein, at 1,764,093 to 1,764,827 _1573 PP_1574: PP_1574 - conserved protein of unknown function, at 1,764,836 to 1,765,306 _1574 PP_1575: PP_1575 - conserved protein of unknown function, at 1,765,369 to 1,765,530 _1575 PP_1576: PP_1576 - putative Immunity protein, at 1,765,592 to 1,765,915 _1576 Position (kb) 1764 1765Strain fitness (log2 ratio) -2 -1 0 1 2at 1763.095 kb on + strand, within PP_1570at 1763.095 kb on + strand, within PP_1570at 1763.096 kb on - strand, within PP_1570at 1763.096 kb on - strand, within PP_1570at 1763.153 kb on + strandat 1763.153 kb on + strandat 1763.154 kb on - strandat 1763.154 kb on - strandat 1763.505 kb on + strand, within PP_1571at 1763.546 kb on - strand, within PP_1571at 1763.588 kb on - strand, within PP_1571at 1763.604 kb on - strand, within PP_1571at 1763.741 kb on - strand, within PP_1572at 1763.779 kb on + strand, within PP_1572at 1763.779 kb on + strand, within PP_1572at 1763.780 kb on - strand, within PP_1572at 1763.780 kb on - strand, within PP_1572at 1763.819 kb on - strand, within PP_1572at 1763.819 kb on - strand, within PP_1572at 1763.938 kb on + strand, within PP_1572at 1763.938 kb on + strand, within PP_1572at 1763.938 kb on + strand, within PP_1572at 1763.938 kb on + strand, within PP_1572at 1763.938 kb on + strand, within PP_1572at 1763.939 kb on - strand, within PP_1572at 1763.987 kb on - strand, within PP_1572at 1764.046 kb on + strandat 1764.123 kb on + strandat 1764.123 kb on + strandat 1764.123 kb on + strandat 1764.124 kb on - strandat 1764.153 kb on - strandat 1764.157 kb on + strandat 1764.157 kb on + strandat 1764.157 kb on + strandat 1764.158 kb on - strandat 1764.259 kb on - strand, within PP_1573at 1764.259 kb on - strand, within PP_1573at 1764.410 kb on + strand, within PP_1573at 1764.411 kb on - strand, within PP_1573at 1764.411 kb on - strand, within PP_1573at 1764.411 kb on - strand, within PP_1573at 1764.411 kb on - strand, within PP_1573at 1764.475 kb on - strand, within PP_1573at 1764.591 kb on + strand, within PP_1573at 1764.594 kb on - strand, within PP_1573at 1764.594 kb on - strand, within PP_1573at 1764.594 kb on - strand, within PP_1573at 1764.606 kb on - strand, within PP_1573at 1764.647 kb on + strand, within PP_1573at 1764.647 kb on + strand, within PP_1573at 1764.718 kb on - strand, within PP_1573at 1764.944 kb on + strand, within PP_1574at 1764.944 kb on + strand, within PP_1574at 1764.944 kb on + strand, within PP_1574at 1764.945 kb on - strand, within PP_1574at 1764.945 kb on - strand, within PP_1574at 1764.945 kb on - strand, within PP_1574at 1765.000 kb on + strand, within PP_1574at 1765.000 kb on + strand, within PP_1574at 1765.085 kb on - strand, within PP_1574at 1765.182 kb on + strand, within PP_1574at 1765.183 kb on - strand, within PP_1574at 1765.183 kb on - strand, within PP_1574at 1765.183 kb on - strand, within PP_1574at 1765.337 kb on - strandat 1765.337 kb on - strandat 1765.450 kb on + strand, within PP_1575at 1765.451 kb on - strand, within PP_1575at 1765.518 kb on + strandat 1765.519 kb on - strandat 1765.519 kb on - strandat 1765.519 kb on - strandat 1765.545 kb on + strandat 1765.559 kb on + strandat 1765.560 kb on - strandat 1765.560 kb on - strandat 1765.616 kb on + strandat 1765.616 kb on + strandat 1765.617 kb on - strandat 1765.633 kb on - strand, within PP_1576at 1765.646 kb on + strand, within PP_1576at 1765.646 kb on + strand, within PP_1576at 1765.691 kb on + strand, within PP_1576at 1765.759 kb on - strand, within PP_1576at 1765.819 kb on + strand, within PP_1576at 1765.820 kb on - strand, within PP_1576at 1765.823 kb on + strand, within PP_1576at 1765.823 kb on + strand, within PP_1576

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
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1,763,095 + PP_1570 0.74 -0.0
1,763,095 + PP_1570 0.74 -1.4
1,763,096 - PP_1570 0.74 -0.9
1,763,096 - PP_1570 0.74 -0.8
1,763,153 + -0.0
1,763,153 + -0.4
1,763,154 - -0.7
1,763,154 - -0.9
1,763,505 + PP_1571 0.67 +0.2
1,763,546 - PP_1571 0.76 -0.9
1,763,588 - PP_1571 0.85 -0.3
1,763,604 - PP_1571 0.88 +0.5
1,763,741 - PP_1572 0.22 +0.9
1,763,779 + PP_1572 0.33 -0.4
1,763,779 + PP_1572 0.33 -0.3
1,763,780 - PP_1572 0.33 +0.5
1,763,780 - PP_1572 0.33 -0.9
1,763,819 - PP_1572 0.43 -0.9
1,763,819 - PP_1572 0.43 -1.4
1,763,938 + PP_1572 0.76 +0.8
1,763,938 + PP_1572 0.76 +0.6
1,763,938 + PP_1572 0.76 +0.3
1,763,938 + PP_1572 0.76 +1.4
1,763,938 + PP_1572 0.76 +0.0
1,763,939 - PP_1572 0.76 +1.3
1,763,987 - PP_1572 0.89 -2.0
1,764,046 + -1.1
1,764,123 + +0.5
1,764,123 + -0.8
1,764,123 + -0.0
1,764,124 - -1.7
1,764,153 - -0.9
1,764,157 + +0.6
1,764,157 + +0.4
1,764,157 + -0.4
1,764,158 - +0.8
1,764,259 - PP_1573 0.23 -0.1
1,764,259 - PP_1573 0.23 -2.5
1,764,410 + PP_1573 0.43 -0.3
1,764,411 - PP_1573 0.43 -0.1
1,764,411 - PP_1573 0.43 -0.7
1,764,411 - PP_1573 0.43 -0.4
1,764,411 - PP_1573 0.43 -1.5
1,764,475 - PP_1573 0.52 -1.2
1,764,591 + PP_1573 0.68 -0.4
1,764,594 - PP_1573 0.68 -0.1
1,764,594 - PP_1573 0.68 -0.1
1,764,594 - PP_1573 0.68 -0.5
1,764,606 - PP_1573 0.70 -1.4
1,764,647 + PP_1573 0.75 -0.4
1,764,647 + PP_1573 0.75 -1.2
1,764,718 - PP_1573 0.85 -0.0
1,764,944 + PP_1574 0.23 -1.8
1,764,944 + PP_1574 0.23 -1.1
1,764,944 + PP_1574 0.23 +0.1
1,764,945 - PP_1574 0.23 -0.7
1,764,945 - PP_1574 0.23 -0.7
1,764,945 - PP_1574 0.23 +0.5
1,765,000 + PP_1574 0.35 -0.9
1,765,000 + PP_1574 0.35 +0.9
1,765,085 - PP_1574 0.53 -0.8
1,765,182 + PP_1574 0.73 -0.4
1,765,183 - PP_1574 0.74 -0.1
1,765,183 - PP_1574 0.74 +0.1
1,765,183 - PP_1574 0.74 -0.0
1,765,337 - -0.5
1,765,337 - +0.7
1,765,450 + PP_1575 0.50 +0.5
1,765,451 - PP_1575 0.51 -1.6
1,765,518 + -0.8
1,765,519 - +1.2
1,765,519 - +0.5
1,765,519 - +0.1
1,765,545 + -0.5
1,765,559 + -1.0
1,765,560 - -0.4
1,765,560 - +1.4
1,765,616 + +0.2
1,765,616 + +0.0
1,765,617 - -0.6
1,765,633 - PP_1576 0.13 +0.8
1,765,646 + PP_1576 0.17 -0.4
1,765,646 + PP_1576 0.17 -1.3
1,765,691 + PP_1576 0.31 +1.8
1,765,759 - PP_1576 0.52 -1.2
1,765,819 + PP_1576 0.70 -1.0
1,765,820 - PP_1576 0.70 +0.1
1,765,823 + PP_1576 0.71 +0.1
1,765,823 + PP_1576 0.71 -0.0

Or see this region's nucleotide sequence