Strain Fitness in Pseudomonas putida KT2440 around PP_1519

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1517 and PP_1518 are separated by 48 nucleotidesPP_1518 and PP_1519 are separated by 33 nucleotidesPP_1519 and PP_1520 are separated by 76 nucleotides PP_1517: PP_1517 - RND efflux transporter, at 1,721,368 to 1,724,433 _1517 PP_1518: PP_1518 - conserved exported protein of unknown function, at 1,724,482 to 1,725,168 _1518 PP_1519: PP_1519 - putative Lipoprotein, at 1,725,202 to 1,725,600 _1519 PP_1520: PP_1520 - glycerol-3-phosphate acyltransferase, at 1,725,677 to 1,728,163 _1520 Position (kb) 1725 1726Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1724.202 kb on - strandat 1724.202 kb on - strandat 1724.313 kb on + strandat 1724.314 kb on - strandat 1724.324 kb on - strandat 1724.376 kb on + strandat 1724.376 kb on + strandat 1724.377 kb on - strandat 1724.377 kb on - strandat 1724.377 kb on - strandat 1724.377 kb on - strandat 1724.377 kb on - strandat 1724.401 kb on + strandat 1724.453 kb on + strandat 1724.603 kb on + strand, within PP_1518at 1724.604 kb on - strand, within PP_1518at 1724.604 kb on - strand, within PP_1518at 1724.669 kb on + strand, within PP_1518at 1724.669 kb on + strand, within PP_1518at 1724.670 kb on - strand, within PP_1518at 1724.670 kb on - strand, within PP_1518at 1724.670 kb on - strand, within PP_1518at 1724.670 kb on - strand, within PP_1518at 1724.760 kb on - strand, within PP_1518at 1725.194 kb on + strandat 1725.195 kb on - strandat 1725.195 kb on - strandat 1725.195 kb on - strandat 1725.230 kb on - strandat 1725.320 kb on - strand, within PP_1519at 1725.320 kb on - strand, within PP_1519at 1725.320 kb on - strand, within PP_1519at 1725.320 kb on - strand, within PP_1519at 1725.359 kb on + strand, within PP_1519at 1725.359 kb on + strandat 1725.359 kb on + strand, within PP_1519at 1725.359 kb on + strand, within PP_1519at 1725.359 kb on + strand, within PP_1519at 1725.360 kb on - strand, within PP_1519at 1725.360 kb on - strand, within PP_1519at 1725.360 kb on - strand, within PP_1519at 1725.360 kb on - strand, within PP_1519at 1725.504 kb on - strand, within PP_1519at 1725.504 kb on - strand, within PP_1519at 1725.755 kb on + strandat 1725.756 kb on - strandat 1726.011 kb on + strand, within PP_1520at 1726.011 kb on + strand, within PP_1520at 1726.012 kb on - strand, within PP_1520at 1726.096 kb on - strand, within PP_1520at 1726.230 kb on + strand, within PP_1520at 1726.231 kb on - strand, within PP_1520at 1726.231 kb on - strand, within PP_1520at 1726.231 kb on - strand, within PP_1520at 1726.231 kb on - strand, within PP_1520at 1726.326 kb on + strandat 1726.326 kb on + strand, within PP_1520at 1726.327 kb on - strand, within PP_1520at 1726.329 kb on + strand, within PP_1520at 1726.330 kb on - strand, within PP_1520at 1726.330 kb on - strand, within PP_1520at 1726.498 kb on - strand, within PP_1520

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
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1,724,202 - -0.3
1,724,202 - -1.1
1,724,313 + -0.0
1,724,314 - +0.5
1,724,324 - +0.8
1,724,376 + -0.5
1,724,376 + +1.0
1,724,377 - -0.6
1,724,377 - +0.8
1,724,377 - -0.8
1,724,377 - -0.3
1,724,377 - +0.0
1,724,401 + -0.7
1,724,453 + +2.7
1,724,603 + PP_1518 0.18 -0.2
1,724,604 - PP_1518 0.18 +0.4
1,724,604 - PP_1518 0.18 -0.6
1,724,669 + PP_1518 0.27 -0.2
1,724,669 + PP_1518 0.27 -0.2
1,724,670 - PP_1518 0.27 -0.2
1,724,670 - PP_1518 0.27 -0.5
1,724,670 - PP_1518 0.27 -0.5
1,724,670 - PP_1518 0.27 +0.4
1,724,760 - PP_1518 0.40 -1.1
1,725,194 + -0.6
1,725,195 - +0.1
1,725,195 - -0.5
1,725,195 - -0.6
1,725,230 - +1.8
1,725,320 - PP_1519 0.30 +0.1
1,725,320 - PP_1519 0.30 -1.5
1,725,320 - PP_1519 0.30 -0.3
1,725,320 - PP_1519 0.30 +1.4
1,725,359 + PP_1519 0.39 +1.5
1,725,359 + +1.6
1,725,359 + PP_1519 0.39 -0.7
1,725,359 + PP_1519 0.39 -1.0
1,725,359 + PP_1519 0.39 +2.0
1,725,360 - PP_1519 0.40 +1.0
1,725,360 - PP_1519 0.40 -1.0
1,725,360 - PP_1519 0.40 +0.6
1,725,360 - PP_1519 0.40 +2.4
1,725,504 - PP_1519 0.76 +2.1
1,725,504 - PP_1519 0.76 -0.7
1,725,755 + -2.0
1,725,756 - +0.5
1,726,011 + PP_1520 0.13 +0.7
1,726,011 + PP_1520 0.13 +0.4
1,726,012 - PP_1520 0.13 -0.1
1,726,096 - PP_1520 0.17 -0.1
1,726,230 + PP_1520 0.22 -1.3
1,726,231 - PP_1520 0.22 +0.9
1,726,231 - PP_1520 0.22 -0.6
1,726,231 - PP_1520 0.22 +0.5
1,726,231 - PP_1520 0.22 +0.5
1,726,326 + +3.4
1,726,326 + PP_1520 0.26 -0.4
1,726,327 - PP_1520 0.26 +0.7
1,726,329 + PP_1520 0.26 -0.1
1,726,330 - PP_1520 0.26 +0.5
1,726,330 - PP_1520 0.26 -0.9
1,726,498 - PP_1520 0.33 -0.3

Or see this region's nucleotide sequence