Strain Fitness in Pseudomonas putida KT2440 around PP_1099

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
1,256,795	-				-0.2
1,256,853	-				-0.5
1,256,904	+				+2.4
1,256,904	+				+4.0
1,256,912	+				+2.8
1,256,913	-				-0.1
1,256,981	-		PP_1099	0.29	-1.2
1,257,103	+		PP_1099	0.87	-0.5
1,257,104	-		PP_1099	0.87	-0.6
1,257,104	-		PP_1099	0.87	-0.6
1,257,104	-		PP_1099	0.87	+4.0
1,257,243	-				+0.3
1,257,388	-				+2.4
1,257,411	+				-0.7
1,257,411	+				-0.2
1,257,584	+				+4.0
1,257,591	-		PP_1100	0.23	+4.0
1,257,591	-				+4.0
1,257,747	-		PP_1100	0.51	+1.7
1,257,797	+				+4.0
1,257,966	-				+4.0
1,257,987	-				+3.0
1,258,072	+				-0.4