Strain Fitness in Pseudomonas putida KT2440 around PP_0969

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0968 and PP_0969 are separated by 82 nucleotidesPP_0969 and PP_0970 overlap by 11 nucleotides PP_0968: PP_0968 - conserved protein of unknown function, at 1,108,011 to 1,109,252 _0968 PP_0969: PP_0969 - Transcriptional regulator, GntR family, at 1,109,335 to 1,109,985 _0969 PP_0970: PP_0970 - Cyanate MFS transporter, at 1,109,975 to 1,111,279 _0970 Position (kb) 1109 1110Strain fitness (log2 ratio) -2 -1 0 1at 1108.495 kb on + strand, within PP_0968at 1108.514 kb on + strand, within PP_0968at 1108.514 kb on + strand, within PP_0968at 1108.515 kb on - strand, within PP_0968at 1108.524 kb on + strand, within PP_0968at 1108.525 kb on - strand, within PP_0968at 1108.525 kb on - strand, within PP_0968at 1108.566 kb on + strand, within PP_0968at 1108.567 kb on - strand, within PP_0968at 1108.567 kb on - strand, within PP_0968at 1108.567 kb on - strand, within PP_0968at 1108.621 kb on + strand, within PP_0968at 1108.621 kb on + strand, within PP_0968at 1108.633 kb on + strand, within PP_0968at 1108.634 kb on - strand, within PP_0968at 1108.758 kb on + strand, within PP_0968at 1108.831 kb on + strand, within PP_0968at 1108.831 kb on + strand, within PP_0968at 1108.831 kb on + strand, within PP_0968at 1108.832 kb on - strand, within PP_0968at 1108.843 kb on + strand, within PP_0968at 1108.994 kb on + strand, within PP_0968at 1108.994 kb on + strand, within PP_0968at 1109.015 kb on - strand, within PP_0968at 1109.015 kb on - strand, within PP_0968at 1109.015 kb on - strand, within PP_0968at 1109.026 kb on + strand, within PP_0968at 1109.071 kb on + strand, within PP_0968at 1109.072 kb on - strand, within PP_0968at 1109.072 kb on - strand, within PP_0968at 1109.172 kb on + strandat 1109.263 kb on + strandat 1109.263 kb on + strandat 1109.264 kb on - strandat 1109.264 kb on - strandat 1109.264 kb on - strandat 1109.275 kb on + strandat 1109.275 kb on + strandat 1109.275 kb on + strandat 1109.297 kb on + strandat 1109.340 kb on + strandat 1109.340 kb on + strandat 1109.341 kb on - strandat 1109.548 kb on + strand, within PP_0969at 1109.548 kb on + strand, within PP_0969at 1109.602 kb on - strand, within PP_0969at 1109.749 kb on + strand, within PP_0969at 1109.750 kb on - strand, within PP_0969at 1109.750 kb on - strand, within PP_0969at 1109.750 kb on - strand, within PP_0969at 1109.750 kb on - strand, within PP_0969at 1109.750 kb on - strand, within PP_0969at 1109.750 kb on - strand, within PP_0969at 1109.811 kb on - strand, within PP_0969at 1109.865 kb on + strand, within PP_0969at 1109.865 kb on + strand, within PP_0969at 1109.866 kb on - strand, within PP_0969at 1109.866 kb on - strand, within PP_0969at 1109.866 kb on - strand, within PP_0969at 1109.866 kb on - strand, within PP_0969at 1110.201 kb on + strand, within PP_0970at 1110.201 kb on + strand, within PP_0970at 1110.201 kb on + strand, within PP_0970at 1110.366 kb on + strand, within PP_0970at 1110.367 kb on - strand, within PP_0970at 1110.367 kb on - strand, within PP_0970at 1110.373 kb on + strand, within PP_0970at 1110.373 kb on + strand, within PP_0970at 1110.374 kb on - strand, within PP_0970at 1110.374 kb on - strand, within PP_0970at 1110.441 kb on + strand, within PP_0970at 1110.441 kb on + strand, within PP_0970at 1110.442 kb on - strand, within PP_0970at 1110.442 kb on - strand, within PP_0970at 1110.442 kb on - strand, within PP_0970at 1110.447 kb on + strand, within PP_0970at 1110.501 kb on + strand, within PP_0970at 1110.501 kb on + strand, within PP_0970at 1110.502 kb on - strand, within PP_0970at 1110.502 kb on - strand, within PP_0970at 1110.502 kb on - strand, within PP_0970at 1110.503 kb on + strand, within PP_0970at 1110.503 kb on + strand, within PP_0970at 1110.503 kb on + strand, within PP_0970at 1110.503 kb on + strand, within PP_0970at 1110.504 kb on - strand, within PP_0970at 1110.504 kb on - strand, within PP_0970at 1110.504 kb on - strand, within PP_0970at 1110.504 kb on - strand, within PP_0970at 1110.504 kb on - strand, within PP_0970at 1110.504 kb on - strand, within PP_0970at 1110.504 kb on - strand, within PP_0970at 1110.517 kb on - strand, within PP_0970at 1110.552 kb on + strand, within PP_0970at 1110.552 kb on + strand, within PP_0970at 1110.731 kb on + strand, within PP_0970at 1110.731 kb on + strand, within PP_0970at 1110.731 kb on + strand, within PP_0970at 1110.732 kb on - strand, within PP_0970at 1110.732 kb on - strand, within PP_0970at 1110.732 kb on - strand, within PP_0970at 1110.732 kb on - strand, within PP_0970at 1110.732 kb on - strand, within PP_0970at 1110.732 kb on - strand, within PP_0970at 1110.732 kb on - strand, within PP_0970at 1110.732 kb on - strand, within PP_0970at 1110.734 kb on - strand, within PP_0970at 1110.734 kb on - strand, within PP_0970at 1110.758 kb on + strand, within PP_0970at 1110.758 kb on + strandat 1110.759 kb on - strand, within PP_0970at 1110.759 kb on - strand, within PP_0970at 1110.963 kb on - strand, within PP_0970at 1110.963 kb on - strand, within PP_0970

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
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1,108,495 + PP_0968 0.39 +0.9
1,108,514 + PP_0968 0.40 -1.5
1,108,514 + PP_0968 0.40 +0.4
1,108,515 - PP_0968 0.41 -0.5
1,108,524 + PP_0968 0.41 +0.5
1,108,525 - PP_0968 0.41 -0.0
1,108,525 - PP_0968 0.41 -0.6
1,108,566 + PP_0968 0.45 -1.7
1,108,567 - PP_0968 0.45 -0.7
1,108,567 - PP_0968 0.45 +1.4
1,108,567 - PP_0968 0.45 -0.9
1,108,621 + PP_0968 0.49 -0.1
1,108,621 + PP_0968 0.49 -0.4
1,108,633 + PP_0968 0.50 +1.1
1,108,634 - PP_0968 0.50 +0.2
1,108,758 + PP_0968 0.60 +0.7
1,108,831 + PP_0968 0.66 -1.2
1,108,831 + PP_0968 0.66 -0.1
1,108,831 + PP_0968 0.66 +0.7
1,108,832 - PP_0968 0.66 -0.2
1,108,843 + PP_0968 0.67 -0.0
1,108,994 + PP_0968 0.79 +0.9
1,108,994 + PP_0968 0.79 -0.1
1,109,015 - PP_0968 0.81 -0.9
1,109,015 - PP_0968 0.81 +1.7
1,109,015 - PP_0968 0.81 -0.8
1,109,026 + PP_0968 0.82 +0.6
1,109,071 + PP_0968 0.85 +0.4
1,109,072 - PP_0968 0.85 +0.1
1,109,072 - PP_0968 0.85 +0.1
1,109,172 + -0.3
1,109,263 + +0.8
1,109,263 + -0.5
1,109,264 - +1.0
1,109,264 - +0.2
1,109,264 - +1.7
1,109,275 + +0.2
1,109,275 + +0.6
1,109,275 + +0.4
1,109,297 + -2.1
1,109,340 + -0.3
1,109,340 + -0.4
1,109,341 - +0.0
1,109,548 + PP_0969 0.33 -1.3
1,109,548 + PP_0969 0.33 -1.2
1,109,602 - PP_0969 0.41 -0.1
1,109,749 + PP_0969 0.64 -0.9
1,109,750 - PP_0969 0.64 -0.7
1,109,750 - PP_0969 0.64 +0.4
1,109,750 - PP_0969 0.64 -0.4
1,109,750 - PP_0969 0.64 -0.2
1,109,750 - PP_0969 0.64 -1.1
1,109,750 - PP_0969 0.64 -0.3
1,109,811 - PP_0969 0.73 -1.4
1,109,865 + PP_0969 0.81 -0.7
1,109,865 + PP_0969 0.81 -0.6
1,109,866 - PP_0969 0.82 -0.6
1,109,866 - PP_0969 0.82 -0.6
1,109,866 - PP_0969 0.82 -0.6
1,109,866 - PP_0969 0.82 -0.3
1,110,201 + PP_0970 0.17 +0.8
1,110,201 + PP_0970 0.17 +0.2
1,110,201 + PP_0970 0.17 +1.7
1,110,366 + PP_0970 0.30 -0.0
1,110,367 - PP_0970 0.30 +0.8
1,110,367 - PP_0970 0.30 -0.2
1,110,373 + PP_0970 0.30 -0.5
1,110,373 + PP_0970 0.30 -0.3
1,110,374 - PP_0970 0.31 -2.1
1,110,374 - PP_0970 0.31 -0.8
1,110,441 + PP_0970 0.36 -0.3
1,110,441 + PP_0970 0.36 -1.6
1,110,442 - PP_0970 0.36 +0.4
1,110,442 - PP_0970 0.36 +0.6
1,110,442 - PP_0970 0.36 -0.5
1,110,447 + PP_0970 0.36 -0.5
1,110,501 + PP_0970 0.40 +0.2
1,110,501 + PP_0970 0.40 -0.5
1,110,502 - PP_0970 0.40 -0.2
1,110,502 - PP_0970 0.40 +0.0
1,110,502 - PP_0970 0.40 -0.3
1,110,503 + PP_0970 0.40 -1.0
1,110,503 + PP_0970 0.40 -0.4
1,110,503 + PP_0970 0.40 -0.7
1,110,503 + PP_0970 0.40 +0.7
1,110,504 - PP_0970 0.41 +0.0
1,110,504 - PP_0970 0.41 -0.1
1,110,504 - PP_0970 0.41 +0.9
1,110,504 - PP_0970 0.41 -0.2
1,110,504 - PP_0970 0.41 -1.6
1,110,504 - PP_0970 0.41 -0.1
1,110,504 - PP_0970 0.41 -1.0
1,110,517 - PP_0970 0.42 +0.1
1,110,552 + PP_0970 0.44 +0.3
1,110,552 + PP_0970 0.44 +0.6
1,110,731 + PP_0970 0.58 +1.5
1,110,731 + PP_0970 0.58 +0.4
1,110,731 + PP_0970 0.58 -1.4
1,110,732 - PP_0970 0.58 -0.4
1,110,732 - PP_0970 0.58 +0.7
1,110,732 - PP_0970 0.58 +0.5
1,110,732 - PP_0970 0.58 -0.5
1,110,732 - PP_0970 0.58 +0.0
1,110,732 - PP_0970 0.58 +0.1
1,110,732 - PP_0970 0.58 -0.2
1,110,732 - PP_0970 0.58 -0.5
1,110,734 - PP_0970 0.58 +0.0
1,110,734 - PP_0970 0.58 -2.4
1,110,758 + PP_0970 0.60 -0.8
1,110,758 + +1.4
1,110,759 - PP_0970 0.60 -0.4
1,110,759 - PP_0970 0.60 -0.8
1,110,963 - PP_0970 0.76 -0.8
1,110,963 - PP_0970 0.76 -1.0

Or see this region's nucleotide sequence