Strain Fitness in Pseudomonas putida KT2440 around PP_0915

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
1,057,421	+		PP_0914	0.69	+1.3
1,057,422	-		PP_0914	0.69	+0.6
1,057,422	-		PP_0914	0.69	-0.3
1,057,507	-		PP_0914	0.73	+0.6
1,057,507	-		PP_0914	0.73	-0.7
1,057,557	-		PP_0914	0.75	-0.3
1,057,596	+		PP_0914	0.77	+0.0
1,057,596	+		PP_0914	0.77	+0.5
1,057,606	+		PP_0914	0.78	+1.5
1,057,607	-		PP_0914	0.78	+2.4
1,057,632	+		PP_0914	0.79	-0.5
1,057,636	-		PP_0914	0.79	+1.7
1,057,645	-		PP_0914	0.79	+1.1
1,057,674	+		PP_0914	0.81	+2.9
1,057,675	-		PP_0914	0.81	+0.2
1,057,675	-		PP_0914	0.81	+0.3
1,057,852	-		PP_0914	0.89	+0.8
1,057,930	-				+0.1
1,057,938	+				+0.5
1,057,938	+				+0.7
1,057,938	+				-1.4
1,057,939	-				-1.3
1,057,939	-				-2.1
1,057,939	-				+0.2
1,057,939	-				-1.8
1,057,939	-				+0.3
1,058,053	+				+0.1
1,058,095	+				-1.4
1,058,095	+				+1.4
1,058,095	+				-0.2
1,058,096	-				-0.1
1,058,096	-				+1.1
1,058,096	-				+0.6
1,058,096	-				-0.9
1,058,096	-				+0.4
1,058,114	+				+0.4
1,058,114	+				-0.7
1,058,122	+				+0.9
1,058,157	+				-0.6
1,058,157	+				+2.9
1,058,182	+				+1.5
1,058,183	-				-0.3
1,058,996	-				+0.1
1,059,015	-				-0.4
1,059,015	-				-0.5
1,059,031	+				-0.5
1,059,031	+				+2.1
1,059,038	+				-0.3
1,059,038	+				-0.5
1,059,137	+				-0.2
1,059,138	-				-0.5
1,059,138	-				-0.4
1,059,138	-				+2.9
1,059,317	+		PP_0916	0.27	+0.1
1,059,318	-		PP_0916	0.27	+0.6
1,059,589	+		PP_0916	0.71	-0.0
1,059,590	-		PP_0916	0.71	-0.1
1,059,740	+				-1.4
1,059,741	-				+1.6
1,059,741	-				+0.1