Strain Fitness in Pseudomonas putida KT2440 around PP_0902

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
1,041,300	+				+0.1
1,041,459	+				-0.3
1,041,460	-				-0.2
1,041,460	-				-2.6
1,041,460	-				+0.0
1,041,467	-				-0.7
1,041,550	+				-0.4
1,041,590	+		PP_0901	0.11	-0.3
1,041,591	-		PP_0901	0.11	-1.1
1,041,651	-		PP_0901	0.19	-0.1
1,041,651	-		PP_0901	0.19	+1.6
1,041,695	+		PP_0901	0.26	-1.1
1,041,696	-		PP_0901	0.26	+0.3
1,041,696	-		PP_0901	0.26	+1.2
1,041,696	-		PP_0901	0.26	+0.6
1,041,921	-				+2.4
1,041,921	-		PP_0901	0.59	-0.1
1,041,999	+		PP_0901	0.70	-0.4
1,042,150	+				+0.4
1,042,151	-				-0.3
1,042,199	+				-0.3
1,042,200	-				+0.3
1,042,500	+		PP_0902	0.24	+0.3
1,042,536	+		PP_0902	0.26	-1.6
1,042,536	+		PP_0902	0.26	-0.9
1,042,537	-		PP_0902	0.26	-1.7
1,042,540	+				+1.6
1,042,540	+		PP_0902	0.27	-0.2
1,042,540	+		PP_0902	0.27	+0.5
1,042,540	+		PP_0902	0.27	+0.3
1,042,540	+		PP_0902	0.27	-1.1
1,042,541	-		PP_0902	0.27	-0.9
1,042,541	-		PP_0902	0.27	-1.9
1,042,714	+		PP_0902	0.40	+0.2
1,042,791	-		PP_0902	0.46	-1.0
1,042,883	+		PP_0902	0.53	-1.1
1,042,883	+		PP_0902	0.53	-1.4
1,042,935	-		PP_0902	0.57	+0.1
1,043,154	+		PP_0902	0.73	+0.3
1,043,155	-		PP_0902	0.74	-0.1
1,043,155	-		PP_0902	0.74	-0.8
1,043,226	+		PP_0902	0.79	-1.1
1,043,226	+		PP_0902	0.79	-0.2
1,043,226	+		PP_0902	0.79	+1.4
1,043,228	+		PP_0902	0.79	-0.0
1,043,229	-		PP_0902	0.79	-0.3
1,043,264	-		PP_0902	0.82	-0.2
1,043,264	-		PP_0902	0.82	-1.9
1,043,500	-				-0.1
1,043,509	+				-1.0
1,043,576	+				-1.5
1,043,576	+				-0.6
1,043,577	-				+1.2
1,043,577	-				-0.2
1,043,577	-				-1.4
1,043,577	-				-0.7
1,043,614	+				-1.0
1,043,646	-				-0.3
1,043,646	-				-1.1
1,043,670	-				+0.4
1,043,773	-				+1.9
1,043,773	-		PP_0903	0.24	-0.9
1,043,972	-		PP_0903	0.53	+0.4
1,043,972	-		PP_0903	0.53	-1.1
1,044,058	+		PP_0903	0.66	+1.1
1,044,155	+		PP_0903	0.80	+1.3
1,044,156	-		PP_0903	0.80	+0.1
1,044,175	-		PP_0903	0.83	-1.6
1,044,251	+				-0.6
1,044,269	+				-0.9
1,044,269	+				+0.4
1,044,269	+				+0.7
1,044,269	+				+1.1
1,044,269	+				+1.1
1,044,270	-				+0.2
1,044,273	+				-0.5
1,044,273	+				+0.9
1,044,273	+				-1.5
1,044,273	+				+1.0
1,044,274	-				-0.7
1,044,274	-				-0.4
1,044,274	-				-1.0
1,044,274	-				-0.3
1,044,274	-				-0.7
1,044,274	-				+0.7
1,044,274	-				+0.1
1,044,281	-				+0.7
1,044,288	-				+0.4
1,044,303	+				-0.2
1,044,304	-				-0.1
1,044,371	-		PP_0904	0.11	+0.5
1,044,435	-		PP_0904	0.20	+0.2
1,044,457	+		PP_0904	0.23	-1.3
1,044,457	+		PP_0904	0.23	-0.3
1,044,457	+		PP_0904	0.23	+0.4
1,044,461	+		PP_0904	0.24	-0.1
1,044,461	+		PP_0904	0.24	-0.8
1,044,461	+		PP_0904	0.24	-0.7
1,044,462	-		PP_0904	0.24	-0.9
1,044,462	-		PP_0904	0.24	-0.7
1,044,462	-		PP_0904	0.24	+0.1