Strain Fitness in Pseudomonas putida KT2440 around PP_0785

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
899,600	+				+0.1
899,601	-				-1.0
899,778	-				+0.9
899,781	+				-0.1
899,781	+				-1.6
899,871	-				-2.1
899,916	+				+1.9
900,008	+		PP_0784	0.19	+0.2
900,036	-		PP_0784	0.23	+1.6
900,128	-		PP_0784	0.38	+1.7
900,131	+		PP_0784	0.39	+0.2
900,215	-		PP_0784	0.52	-1.4
900,323	-		PP_0784	0.70	-1.8
900,357	+		PP_0784	0.75	-0.3
900,358	-		PP_0784	0.76	-0.6
900,453	+				+0.2
900,453	+				-2.0
900,453	+				+0.8
900,453	+				-0.1
900,454	-				+2.4
900,454	-				-0.6
900,454	-				+1.3
900,454	-				+0.1
900,456	+				-0.9
900,488	+				+0.9
900,489	-				-0.1
900,507	-				-1.4
900,582	+				-0.6
900,583	-				-0.5
900,583	-				+0.8
900,644	+		PP_0785	0.12	-1.0
900,746	+		PP_0785	0.26	-2.3
900,747	-		PP_0785	0.27	-1.2
900,896	-		PP_0785	0.47	-1.1
900,952	+		PP_0785	0.55	+0.1
900,952	+		PP_0785	0.55	+0.1
900,952	+		PP_0785	0.55	-1.7
900,952	+		PP_0785	0.55	-1.1
900,953	-		PP_0785	0.55	+1.4
900,953	-		PP_0785	0.55	-1.3
901,002	+		PP_0785	0.62	-1.2
901,002	+		PP_0785	0.62	-0.3
901,002	+		PP_0785	0.62	+1.6
901,073	+		PP_0785	0.71	+0.3
901,073	+		PP_0785	0.71	+2.9
901,074	-		PP_0785	0.71	-1.1
901,074	-		PP_0785	0.71	+1.4
901,074	-		PP_0785	0.71	-1.5
901,086	+		PP_0785	0.73	+0.0
901,087	-		PP_0785	0.73	-1.0
901,087	-		PP_0785	0.73	+1.9
901,151	+		PP_0785	0.82	+0.7
901,151	+		PP_0785	0.82	+1.1
901,250	+				-0.3
901,251	-				-0.1
901,251	-				-1.5
901,283	+				+0.1
901,283	+				-0.1
901,283	+				+1.9
901,284	-				-0.3
901,284	-				-1.4
901,318	+				-1.0
901,370	+				-2.2
901,370	+				-0.6
901,371	-				-0.2
901,371	-				-1.0
901,371	-				-1.4
901,395	-				+0.1
901,395	-				+1.2
901,413	+				+1.1
901,424	+				-0.1
901,425	-				+3.9
901,425	-				-0.6
901,425	-				+0.7
901,425	-				+0.2
901,425	-				+1.6
901,425	-				+1.2
901,440	+				+2.4
901,454	+				-0.5
901,454	+				+0.1
901,513	+				-2.4