Strain Fitness in Pseudomonas putida KT2440 around PP_0701

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0700 and PP_0701 are separated by 130 nucleotidesPP_0701 and PP_0702 are separated by 324 nucleotides PP_0700: PP_0700 - putative Transmembrane sensor, at 813,396 to 814,382 _0700 PP_0701: PP_0701 - fosmidomycin efflux system, at 814,513 to 815,727 _0701 PP_0702: PP_0702 - Major facilitator family transporter, at 816,052 to 817,209 _0702 Position (kb) 814 815 816Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 813.650 kb on + strand, within PP_0700at 813.651 kb on - strand, within PP_0700at 813.651 kb on - strand, within PP_0700at 813.783 kb on + strand, within PP_0700at 813.784 kb on - strand, within PP_0700at 813.802 kb on + strand, within PP_0700at 813.803 kb on - strand, within PP_0700at 813.803 kb on - strand, within PP_0700at 813.804 kb on + strand, within PP_0700at 813.805 kb on - strand, within PP_0700at 813.805 kb on - strand, within PP_0700at 813.972 kb on + strand, within PP_0700at 813.972 kb on + strand, within PP_0700at 813.972 kb on + strand, within PP_0700at 813.973 kb on - strand, within PP_0700at 814.037 kb on - strand, within PP_0700at 814.037 kb on - strand, within PP_0700at 814.042 kb on + strand, within PP_0700at 814.043 kb on - strand, within PP_0700at 814.043 kb on - strand, within PP_0700at 814.180 kb on + strand, within PP_0700at 814.200 kb on + strand, within PP_0700at 814.200 kb on + strand, within PP_0700at 814.201 kb on - strand, within PP_0700at 814.201 kb on - strand, within PP_0700at 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.453 kb on + strandat 814.454 kb on - strandat 814.454 kb on - strandat 814.454 kb on - strandat 814.454 kb on - strandat 814.454 kb on - strandat 814.454 kb on - strandat 814.454 kb on - strandat 814.454 kb on - strandat 814.454 kb on - strandat 814.457 kb on + strandat 814.457 kb on + strandat 814.458 kb on - strandat 814.458 kb on - strandat 814.458 kb on - strandat 814.461 kb on + strandat 814.462 kb on - strandat 814.524 kb on + strandat 814.584 kb on + strandat 814.584 kb on + strandat 814.584 kb on + strandat 814.584 kb on + strandat 814.585 kb on - strandat 814.672 kb on + strand, within PP_0701at 814.672 kb on + strand, within PP_0701at 814.673 kb on - strand, within PP_0701at 814.806 kb on + strand, within PP_0701at 814.806 kb on + strand, within PP_0701at 814.807 kb on - strand, within PP_0701at 814.807 kb on - strand, within PP_0701at 814.807 kb on - strand, within PP_0701at 814.807 kb on - strand, within PP_0701at 814.917 kb on + strand, within PP_0701at 815.027 kb on + strand, within PP_0701at 815.111 kb on - strand, within PP_0701at 815.227 kb on + strand, within PP_0701at 815.227 kb on + strandat 815.227 kb on + strand, within PP_0701at 815.227 kb on + strand, within PP_0701at 815.227 kb on + strandat 815.228 kb on - strand, within PP_0701at 815.228 kb on - strand, within PP_0701at 815.228 kb on - strand, within PP_0701at 815.228 kb on - strand, within PP_0701at 815.233 kb on + strand, within PP_0701at 815.233 kb on + strand, within PP_0701at 815.233 kb on + strand, within PP_0701at 815.234 kb on - strand, within PP_0701at 815.234 kb on - strand, within PP_0701at 815.255 kb on - strand, within PP_0701at 815.259 kb on + strand, within PP_0701at 815.259 kb on + strand, within PP_0701at 815.260 kb on - strand, within PP_0701at 815.266 kb on + strand, within PP_0701at 815.267 kb on - strand, within PP_0701at 815.491 kb on - strand, within PP_0701at 815.524 kb on + strand, within PP_0701at 815.524 kb on + strand, within PP_0701at 815.525 kb on - strand, within PP_0701at 815.525 kb on - strand, within PP_0701at 815.624 kb on - strandat 815.644 kb on - strandat 815.650 kb on + strandat 815.650 kb on + strandat 815.650 kb on + strandat 815.651 kb on - strandat 815.651 kb on - strandat 815.651 kb on - strandat 815.651 kb on - strandat 815.656 kb on + strandat 815.657 kb on - strandat 815.657 kb on - strandat 815.657 kb on - strandat 815.712 kb on + strandat 815.712 kb on + strandat 815.712 kb on + strandat 815.712 kb on + strandat 815.719 kb on - strandat 815.817 kb on + strandat 815.817 kb on + strandat 815.818 kb on - strandat 815.821 kb on - strandat 815.821 kb on - strandat 816.049 kb on + strandat 816.049 kb on + strandat 816.049 kb on + strandat 816.049 kb on + strandat 816.050 kb on - strandat 816.050 kb on - strandat 816.050 kb on - strandat 816.050 kb on - strandat 816.050 kb on - strandat 816.078 kb on - strandat 816.265 kb on + strand, within PP_0702at 816.265 kb on + strand, within PP_0702at 816.265 kb on + strand, within PP_0702at 816.265 kb on + strand, within PP_0702at 816.265 kb on + strand, within PP_0702at 816.266 kb on - strand, within PP_0702at 816.266 kb on - strand, within PP_0702at 816.266 kb on - strand, within PP_0702at 816.266 kb on - strand, within PP_0702at 816.266 kb on - strand, within PP_0702at 816.266 kb on - strand, within PP_0702at 816.266 kb on - strand, within PP_0702at 816.451 kb on + strand, within PP_0702at 816.452 kb on - strand, within PP_0702at 816.452 kb on - strand, within PP_0702at 816.452 kb on - strand, within PP_0702at 816.724 kb on + strand, within PP_0702

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
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813,650 + PP_0700 0.26 +0.2
813,651 - PP_0700 0.26 -2.0
813,651 - PP_0700 0.26 +2.0
813,783 + PP_0700 0.39 -2.5
813,784 - PP_0700 0.39 -0.2
813,802 + PP_0700 0.41 -2.1
813,803 - PP_0700 0.41 +0.2
813,803 - PP_0700 0.41 +0.0
813,804 + PP_0700 0.41 -1.3
813,805 - PP_0700 0.41 -1.3
813,805 - PP_0700 0.41 +0.2
813,972 + PP_0700 0.58 -0.4
813,972 + PP_0700 0.58 -0.4
813,972 + PP_0700 0.58 -0.3
813,973 - PP_0700 0.58 -0.8
814,037 - PP_0700 0.65 -1.6
814,037 - PP_0700 0.65 -0.5
814,042 + PP_0700 0.65 -1.6
814,043 - PP_0700 0.66 -1.2
814,043 - PP_0700 0.66 -0.8
814,180 + PP_0700 0.79 -0.8
814,200 + PP_0700 0.81 +0.4
814,200 + PP_0700 0.81 +3.0
814,201 - PP_0700 0.82 +1.6
814,201 - PP_0700 0.82 +0.3
814,453 + +0.1
814,453 + -0.3
814,453 + -0.6
814,453 + +0.8
814,453 + -1.4
814,453 + -0.5
814,453 + +0.6
814,453 + +1.1
814,453 + +1.6
814,453 + +0.4
814,453 + -1.0
814,453 + -0.5
814,453 + -0.4
814,454 - -1.2
814,454 - +0.5
814,454 - +0.3
814,454 - +0.2
814,454 - -1.5
814,454 - +0.3
814,454 - +0.3
814,454 - -1.0
814,454 - -1.5
814,457 + +1.1
814,457 + -1.1
814,458 - -1.2
814,458 - -0.5
814,458 - +1.0
814,461 + -1.0
814,462 - +0.3
814,524 + +0.4
814,584 + -0.9
814,584 + -0.2
814,584 + +0.6
814,584 + +0.4
814,585 - -1.1
814,672 + PP_0701 0.13 -0.4
814,672 + PP_0701 0.13 -0.9
814,673 - PP_0701 0.13 -2.3
814,806 + PP_0701 0.24 -1.0
814,806 + PP_0701 0.24 -1.3
814,807 - PP_0701 0.24 +0.8
814,807 - PP_0701 0.24 +0.3
814,807 - PP_0701 0.24 +0.8
814,807 - PP_0701 0.24 -0.0
814,917 + PP_0701 0.33 +0.1
815,027 + PP_0701 0.42 -0.6
815,111 - PP_0701 0.49 -0.6
815,227 + PP_0701 0.59 +0.5
815,227 + +0.8
815,227 + PP_0701 0.59 +0.5
815,227 + PP_0701 0.59 -0.2
815,227 + +1.6
815,228 - PP_0701 0.59 -1.6
815,228 - PP_0701 0.59 -0.2
815,228 - PP_0701 0.59 -0.3
815,228 - PP_0701 0.59 -1.0
815,233 + PP_0701 0.59 +0.6
815,233 + PP_0701 0.59 +0.9
815,233 + PP_0701 0.59 -0.4
815,234 - PP_0701 0.59 -1.4
815,234 - PP_0701 0.59 +0.4
815,255 - PP_0701 0.61 -0.6
815,259 + PP_0701 0.61 +0.7
815,259 + PP_0701 0.61 -0.1
815,260 - PP_0701 0.61 +0.7
815,266 + PP_0701 0.62 +0.2
815,267 - PP_0701 0.62 +4.0
815,491 - PP_0701 0.80 -0.2
815,524 + PP_0701 0.83 +0.2
815,524 + PP_0701 0.83 -0.6
815,525 - PP_0701 0.83 +1.4
815,525 - PP_0701 0.83 +0.8
815,624 - -0.3
815,644 - -0.6
815,650 + -0.1
815,650 + -0.2
815,650 + +1.0
815,651 - -0.0
815,651 - -1.7
815,651 - -0.0
815,651 - +0.8
815,656 + -0.8
815,657 - -0.0
815,657 - +1.5
815,657 - +1.5
815,712 + +0.2
815,712 + -1.4
815,712 + -1.8
815,712 + -0.0
815,719 - +1.7
815,817 + -1.4
815,817 + +1.1
815,818 - -2.0
815,821 - -0.6
815,821 - +0.2
816,049 + -0.6
816,049 + +0.5
816,049 + +0.2
816,049 + -1.3
816,050 - +0.2
816,050 - +1.6
816,050 - -2.1
816,050 - -0.4
816,050 - +0.1
816,078 - -0.3
816,265 + PP_0702 0.18 +0.8
816,265 + PP_0702 0.18 +0.5
816,265 + PP_0702 0.18 -0.1
816,265 + PP_0702 0.18 +3.0
816,265 + PP_0702 0.18 +0.9
816,266 - PP_0702 0.18 +1.0
816,266 - PP_0702 0.18 +1.6
816,266 - PP_0702 0.18 -1.2
816,266 - PP_0702 0.18 -0.0
816,266 - PP_0702 0.18 -0.4
816,266 - PP_0702 0.18 +0.4
816,266 - PP_0702 0.18 +0.6
816,451 + PP_0702 0.34 +1.4
816,452 - PP_0702 0.35 +1.6
816,452 - PP_0702 0.35 -2.3
816,452 - PP_0702 0.35 -0.3
816,724 + PP_0702 0.58 -1.6

Or see this region's nucleotide sequence