Strain Fitness in Pseudomonas putida KT2440 around PP_0537

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0536 and PP_0537 are separated by 524 nucleotidesPP_0537 and PP_0538 are separated by 182 nucleotidesPP_0538 and PP_0539 are separated by 92 nucleotides PP_0536: PP_0536 - conserved protein of unknown function, at 623,210 to 623,680 _0536 PP_0537: PP_0537 - putative transcriptional regulator, at 624,205 to 624,906 _0537 PP_0538: PP_0538 - inorganic pyrophosphatase, at 625,089 to 625,616 _0538 PP_0539: PP_0539 - glucose-regulated peptidase, at 625,709 to 626,524 _0539 Position (kb) 624 625Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 623.241 kb on - strandat 623.422 kb on + strand, within PP_0536at 623.491 kb on + strand, within PP_0536at 623.492 kb on - strand, within PP_0536at 623.492 kb on - strand, within PP_0536at 623.552 kb on - strand, within PP_0536at 623.594 kb on + strand, within PP_0536at 623.595 kb on - strand, within PP_0536at 623.683 kb on + strandat 623.684 kb on - strandat 623.697 kb on + strandat 623.857 kb on + strandat 623.857 kb on + strandat 623.858 kb on - strandat 623.860 kb on - strandat 623.977 kb on + strandat 624.025 kb on + strandat 624.025 kb on + strandat 624.025 kb on + strandat 624.025 kb on + strandat 624.026 kb on - strandat 624.047 kb on - strandat 624.141 kb on + strandat 624.142 kb on - strandat 624.142 kb on - strandat 624.158 kb on + strandat 624.158 kb on + strandat 624.158 kb on + strandat 624.158 kb on + strandat 624.158 kb on + strandat 624.158 kb on + strandat 624.159 kb on - strandat 624.159 kb on - strandat 624.159 kb on - strandat 624.159 kb on - strandat 624.159 kb on - strandat 624.159 kb on - strandat 624.159 kb on - strandat 624.159 kb on - strandat 624.293 kb on + strand, within PP_0537at 624.293 kb on + strand, within PP_0537at 624.294 kb on - strand, within PP_0537at 624.308 kb on + strand, within PP_0537at 624.309 kb on - strand, within PP_0537at 624.309 kb on - strand, within PP_0537at 624.335 kb on + strand, within PP_0537at 624.335 kb on + strand, within PP_0537at 624.335 kb on + strand, within PP_0537at 624.335 kb on + strand, within PP_0537at 624.336 kb on + strand, within PP_0537at 624.336 kb on - strand, within PP_0537at 624.401 kb on + strand, within PP_0537at 624.451 kb on - strand, within PP_0537at 624.602 kb on + strand, within PP_0537at 624.602 kb on + strand, within PP_0537at 624.602 kb on + strand, within PP_0537at 624.602 kb on + strand, within PP_0537at 624.602 kb on + strand, within PP_0537at 624.603 kb on - strand, within PP_0537at 624.603 kb on - strand, within PP_0537at 624.603 kb on - strand, within PP_0537at 624.603 kb on - strand, within PP_0537at 624.603 kb on - strand, within PP_0537at 624.603 kb on - strand, within PP_0537at 624.648 kb on + strand, within PP_0537at 624.986 kb on + strandat 624.986 kb on + strandat 624.999 kb on + strandat 624.999 kb on + strandat 624.999 kb on + strandat 625.000 kb on - strandat 625.000 kb on - strandat 625.009 kb on + strandat 625.658 kb on - strandat 625.658 kb on - strandat 625.660 kb on - strandat 625.660 kb on - strandat 625.783 kb on - strandat 625.783 kb on - strandat 625.803 kb on + strand, within PP_0539at 625.803 kb on + strand, within PP_0539at 625.803 kb on + strand, within PP_0539at 625.804 kb on - strand, within PP_0539at 625.816 kb on - strand, within PP_0539at 625.844 kb on - strand, within PP_0539at 625.896 kb on + strand, within PP_0539at 625.896 kb on + strand, within PP_0539at 625.896 kb on + strand, within PP_0539at 625.896 kb on + strand, within PP_0539at 625.897 kb on - strand, within PP_0539

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
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623,241 - +0.5
623,422 + PP_0536 0.45 -0.1
623,491 + PP_0536 0.60 +0.8
623,492 - PP_0536 0.60 -1.2
623,492 - PP_0536 0.60 +0.2
623,552 - PP_0536 0.73 -0.9
623,594 + PP_0536 0.82 +0.3
623,595 - PP_0536 0.82 +0.5
623,683 + -0.9
623,684 - -0.1
623,697 + -1.1
623,857 + -0.4
623,857 + -0.7
623,858 - -1.2
623,860 - +0.7
623,977 + -0.2
624,025 + -0.2
624,025 + -0.3
624,025 + -1.2
624,025 + -0.6
624,026 - -0.5
624,047 - +0.6
624,141 + -0.1
624,142 - -0.5
624,142 - +0.3
624,158 + +0.8
624,158 + +0.4
624,158 + +0.5
624,158 + +1.0
624,158 + -0.4
624,158 + -0.6
624,159 - -1.3
624,159 - -0.4
624,159 - -0.9
624,159 - -1.2
624,159 - -0.3
624,159 - -0.1
624,159 - -0.6
624,159 - -0.5
624,293 + PP_0537 0.13 +1.5
624,293 + PP_0537 0.13 +1.0
624,294 - PP_0537 0.13 +0.4
624,308 + PP_0537 0.15 -0.4
624,309 - PP_0537 0.15 +4.0
624,309 - PP_0537 0.15 -0.6
624,335 + PP_0537 0.19 +0.5
624,335 + PP_0537 0.19 +0.6
624,335 + PP_0537 0.19 +4.0
624,335 + PP_0537 0.19 +3.3
624,336 + PP_0537 0.19 +0.1
624,336 - PP_0537 0.19 +0.7
624,401 + PP_0537 0.28 +3.0
624,451 - PP_0537 0.35 +0.2
624,602 + PP_0537 0.57 +0.5
624,602 + PP_0537 0.57 -0.4
624,602 + PP_0537 0.57 -0.1
624,602 + PP_0537 0.57 +0.2
624,602 + PP_0537 0.57 -0.3
624,603 - PP_0537 0.57 +1.4
624,603 - PP_0537 0.57 +0.2
624,603 - PP_0537 0.57 +0.8
624,603 - PP_0537 0.57 -0.2
624,603 - PP_0537 0.57 -1.1
624,603 - PP_0537 0.57 +0.2
624,648 + PP_0537 0.63 +0.2
624,986 + -0.1
624,986 + +3.0
624,999 + +0.8
624,999 + -0.3
624,999 + -0.9
625,000 - -0.9
625,000 - -0.5
625,009 + +0.1
625,658 - -0.7
625,658 - +4.0
625,660 - -2.0
625,660 - +1.1
625,783 - -0.5
625,783 - +0.0
625,803 + PP_0539 0.12 +1.4
625,803 + PP_0539 0.12 +1.4
625,803 + PP_0539 0.12 -1.3
625,804 - PP_0539 0.12 +0.7
625,816 - PP_0539 0.13 -0.3
625,844 - PP_0539 0.17 -0.5
625,896 + PP_0539 0.23 -0.2
625,896 + PP_0539 0.23 +0.8
625,896 + PP_0539 0.23 -0.3
625,896 + PP_0539 0.23 -0.0
625,897 - PP_0539 0.23 +0.3

Or see this region's nucleotide sequence