Strain Fitness in Pseudomonas putida KT2440 around PP_0361

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0359 and PP_0360 are separated by 65 nucleotidesPP_0360 and PP_0361 are separated by 49 nucleotidesPP_0361 and PP_0362 are separated by 89 nucleotides PP_0359: PP_0359 - serine/threonine protein kinase, at 437,352 to 438,359 _0359 PP_0360: PP_0360 - Molybdate transport regulator, at 438,425 to 439,189 _0360 PP_0361: PP_0361 - putative Competence protein ComF, at 439,239 to 439,970 _0361 PP_0362: PP_0362 - Biotin synthase, at 440,060 to 441,118 _0362 Position (kb) 439 440Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 438.343 kb on - strandat 438.362 kb on + strandat 438.370 kb on + strandat 438.370 kb on + strandat 438.427 kb on - strandat 438.427 kb on - strandat 438.450 kb on + strandat 438.450 kb on + strandat 438.451 kb on - strandat 438.451 kb on - strandat 438.622 kb on + strand, within PP_0360at 438.623 kb on - strand, within PP_0360at 438.623 kb on - strand, within PP_0360at 438.623 kb on - strand, within PP_0360at 438.623 kb on - strand, within PP_0360at 438.656 kb on + strand, within PP_0360at 438.657 kb on - strand, within PP_0360at 438.677 kb on + strand, within PP_0360at 438.678 kb on - strand, within PP_0360at 438.790 kb on - strand, within PP_0360at 438.905 kb on + strand, within PP_0360at 438.936 kb on + strand, within PP_0360at 438.936 kb on + strand, within PP_0360at 438.937 kb on - strand, within PP_0360at 439.069 kb on - strand, within PP_0360at 439.069 kb on - strand, within PP_0360at 439.076 kb on - strand, within PP_0360at 439.120 kb on + strandat 439.120 kb on + strandat 439.121 kb on - strandat 439.121 kb on - strandat 439.121 kb on - strandat 439.193 kb on + strandat 439.193 kb on + strandat 439.193 kb on + strandat 439.201 kb on - strandat 439.201 kb on - strandat 439.202 kb on + strandat 439.202 kb on + strandat 439.202 kb on + strandat 439.202 kb on + strandat 439.202 kb on + strandat 439.202 kb on + strandat 439.203 kb on - strandat 439.203 kb on - strandat 439.216 kb on - strandat 439.216 kb on - strandat 439.216 kb on - strandat 439.242 kb on + strandat 439.242 kb on + strandat 439.242 kb on + strandat 439.242 kb on + strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.246 kb on + strandat 439.246 kb on + strandat 439.262 kb on + strandat 439.262 kb on + strandat 439.263 kb on - strandat 439.276 kb on + strandat 439.276 kb on + strandat 439.276 kb on + strandat 439.276 kb on + strandat 439.276 kb on + strandat 439.277 kb on - strandat 439.277 kb on - strandat 439.277 kb on - strandat 439.277 kb on - strandat 439.621 kb on + strand, within PP_0361at 439.627 kb on + strand, within PP_0361at 439.627 kb on + strand, within PP_0361at 439.628 kb on - strand, within PP_0361at 439.628 kb on - strand, within PP_0361at 439.902 kb on + strandat 439.902 kb on + strandat 439.903 kb on - strandat 439.970 kb on + strandat 439.971 kb on - strandat 439.985 kb on + strandat 439.986 kb on - strandat 439.986 kb on - strandat 439.995 kb on - strandat 439.995 kb on - strandat 440.037 kb on - strandat 440.043 kb on + strandat 440.044 kb on - strandat 440.252 kb on + strand, within PP_0362at 440.252 kb on + strand, within PP_0362at 440.253 kb on - strand, within PP_0362at 440.253 kb on - strand, within PP_0362at 440.253 kb on - strand, within PP_0362at 440.273 kb on + strand, within PP_0362at 440.274 kb on - strand, within PP_0362at 440.356 kb on + strand, within PP_0362at 440.356 kb on + strand, within PP_0362at 440.357 kb on - strand, within PP_0362at 440.411 kb on + strand, within PP_0362at 440.411 kb on + strand, within PP_0362at 440.411 kb on + strand, within PP_0362at 440.412 kb on - strand, within PP_0362at 440.412 kb on - strand, within PP_0362at 440.412 kb on - strand, within PP_0362at 440.412 kb on - strand, within PP_0362at 440.522 kb on + strand, within PP_0362at 440.523 kb on - strand, within PP_0362at 440.525 kb on + strand, within PP_0362at 440.525 kb on + strand, within PP_0362at 440.525 kb on + strand, within PP_0362at 440.525 kb on + strand, within PP_0362at 440.525 kb on + strand, within PP_0362at 440.525 kb on + strand, within PP_0362at 440.526 kb on - strand, within PP_0362at 440.558 kb on + strand, within PP_0362at 440.581 kb on + strand, within PP_0362at 440.581 kb on + strand, within PP_0362at 440.582 kb on - strand, within PP_0362at 440.582 kb on - strand, within PP_0362at 440.585 kb on + strand, within PP_0362at 440.586 kb on - strand, within PP_0362at 440.586 kb on - strand, within PP_0362at 440.612 kb on + strand, within PP_0362at 440.612 kb on + strand, within PP_0362at 440.612 kb on + strand, within PP_0362at 440.613 kb on - strand, within PP_0362at 440.613 kb on - strand, within PP_0362at 440.613 kb on - strand, within PP_0362at 440.806 kb on + strand, within PP_0362at 440.807 kb on - strand, within PP_0362at 440.813 kb on - strand, within PP_0362at 440.813 kb on - strand, within PP_0362at 440.933 kb on + strand, within PP_0362

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
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438,343 - -1.2
438,362 + -1.2
438,370 + +1.4
438,370 + -2.3
438,427 - -0.2
438,427 - +0.5
438,450 + -0.2
438,450 + +1.0
438,451 - +3.4
438,451 - -0.1
438,622 + PP_0360 0.26 +0.8
438,623 - PP_0360 0.26 -0.1
438,623 - PP_0360 0.26 -2.9
438,623 - PP_0360 0.26 +1.4
438,623 - PP_0360 0.26 +0.1
438,656 + PP_0360 0.30 -0.1
438,657 - PP_0360 0.30 -1.3
438,677 + PP_0360 0.33 +0.2
438,678 - PP_0360 0.33 +1.2
438,790 - PP_0360 0.48 -0.4
438,905 + PP_0360 0.63 +2.4
438,936 + PP_0360 0.67 +0.7
438,936 + PP_0360 0.67 +0.2
438,937 - PP_0360 0.67 +1.0
439,069 - PP_0360 0.84 -0.1
439,069 - PP_0360 0.84 -0.0
439,076 - PP_0360 0.85 -0.3
439,120 + +1.0
439,120 + +0.4
439,121 - +0.9
439,121 - -0.9
439,121 - +1.1
439,193 + -0.7
439,193 + -0.5
439,193 + +0.9
439,201 - -1.3
439,201 - -0.0
439,202 + +0.0
439,202 + -0.3
439,202 + -1.4
439,202 + -0.1
439,202 + -0.1
439,202 + +1.2
439,203 - -0.4
439,203 - +0.5
439,216 - -0.6
439,216 - +0.1
439,216 - +1.1
439,242 + -0.5
439,242 + +1.0
439,242 + -0.5
439,242 + -0.3
439,243 - +0.2
439,243 - -0.6
439,243 - +1.0
439,243 - -0.6
439,243 - +0.9
439,243 - +0.3
439,243 - -2.2
439,243 - -0.8
439,243 - +0.4
439,243 - -1.2
439,243 - +1.0
439,246 + -1.2
439,246 + +0.7
439,262 + +0.3
439,262 + -1.3
439,263 - +1.0
439,276 + -0.4
439,276 + +0.8
439,276 + -0.2
439,276 + -0.4
439,276 + +0.8
439,277 - -0.3
439,277 - -0.7
439,277 - -1.6
439,277 - +1.4
439,621 + PP_0361 0.52 +0.2
439,627 + PP_0361 0.53 -1.0
439,627 + PP_0361 0.53 -1.4
439,628 - PP_0361 0.53 -0.3
439,628 - PP_0361 0.53 -0.9
439,902 + -0.3
439,902 + +2.0
439,903 - -0.4
439,970 + +1.2
439,971 - -2.0
439,985 + -0.6
439,986 - -2.5
439,986 - -2.3
439,995 - -2.4
439,995 - -0.9
440,037 - -2.2
440,043 + -0.3
440,044 - -1.4
440,252 + PP_0362 0.18 -1.7
440,252 + PP_0362 0.18 -0.4
440,253 - PP_0362 0.18 -2.2
440,253 - PP_0362 0.18 -1.7
440,253 - PP_0362 0.18 -2.7
440,273 + PP_0362 0.20 -1.7
440,274 - PP_0362 0.20 -2.0
440,356 + PP_0362 0.28 -1.6
440,356 + PP_0362 0.28 +1.7
440,357 - PP_0362 0.28 -0.1
440,411 + PP_0362 0.33 -3.0
440,411 + PP_0362 0.33 -1.7
440,411 + PP_0362 0.33 -1.9
440,412 - PP_0362 0.33 -1.1
440,412 - PP_0362 0.33 -2.4
440,412 - PP_0362 0.33 -0.3
440,412 - PP_0362 0.33 +0.1
440,522 + PP_0362 0.44 -0.8
440,523 - PP_0362 0.44 -1.6
440,525 + PP_0362 0.44 -1.4
440,525 + PP_0362 0.44 -2.7
440,525 + PP_0362 0.44 -0.8
440,525 + PP_0362 0.44 -2.9
440,525 + PP_0362 0.44 -2.2
440,525 + PP_0362 0.44 -1.9
440,526 - PP_0362 0.44 -2.7
440,558 + PP_0362 0.47 -0.4
440,581 + PP_0362 0.49 +3.0
440,581 + PP_0362 0.49 -1.9
440,582 - PP_0362 0.49 -0.9
440,582 - PP_0362 0.49 -0.7
440,585 + PP_0362 0.50 -2.5
440,586 - PP_0362 0.50 -1.2
440,586 - PP_0362 0.50 -2.7
440,612 + PP_0362 0.52 -0.9
440,612 + PP_0362 0.52 -2.2
440,612 + PP_0362 0.52 -2.4
440,613 - PP_0362 0.52 -1.4
440,613 - PP_0362 0.52 -2.8
440,613 - PP_0362 0.52 -2.7
440,806 + PP_0362 0.70 -1.5
440,807 - PP_0362 0.71 -1.3
440,813 - PP_0362 0.71 -1.6
440,813 - PP_0362 0.71 -3.5
440,933 + PP_0362 0.82 -2.3

Or see this region's nucleotide sequence