Strain Fitness in Escherichia coli BW25113 around b3895
Experiment: LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM |
---|---|---|---|---|---|
remove | |||||
4,083,161 | + | fdoG | b3894 | 0.78 | +2.5 |
4,083,212 | - | fdoG | b3894 | 0.79 | +0.6 |
4,083,245 | + | fdoG | b3894 | 0.80 | +1.6 |
4,083,245 | - | fdoG | b3894 | 0.80 | +1.3 |
4,083,273 | + | fdoG | b3894 | 0.81 | +2.1 |
4,083,286 | + | fdoG | b3894 | 0.82 | +1.9 |
4,083,286 | + | fdoG | b3894 | 0.82 | +0.7 |
4,083,378 | - | fdoG | b3894 | 0.85 | -1.1 |
4,083,378 | - | fdoG | b3894 | 0.85 | +1.2 |
4,083,383 | - | fdoG | b3894 | 0.85 | +1.0 |
4,083,421 | - | fdoG | b3894 | 0.86 | +1.4 |
4,083,421 | - | fdoG | b3894 | 0.86 | +2.2 |
4,083,467 | - | fdoG | b3894 | 0.88 | +1.6 |
4,083,495 | + | fdoG | b3894 | 0.88 | +0.5 |
4,083,557 | - | +1.8 | |||
4,083,585 | + | +2.4 | |||
4,083,585 | + | +0.7 | |||
4,083,658 | - | +1.1 | |||
4,083,671 | + | +1.3 | |||
4,083,671 | + | +1.6 | |||
4,083,671 | + | +1.2 | |||
4,083,671 | + | +0.0 | |||
4,083,735 | - | +1.8 | |||
4,083,792 | - | +1.2 | |||
4,083,792 | - | +1.5 | |||
4,083,832 | + | +0.3 | |||
4,083,832 | + | +2.3 | |||
4,083,856 | - | -0.5 | |||
4,083,856 | - | +1.1 | |||
4,083,874 | - | +0.5 | |||
4,083,874 | - | -0.4 | |||
4,083,896 | - | -1.2 | |||
4,083,896 | - | -0.0 | |||
4,083,915 | - | -1.3 | |||
4,083,921 | - | -2.6 | |||
4,083,921 | - | -0.6 | |||
4,083,943 | - | -1.8 | |||
4,083,943 | - | +0.7 | |||
4,083,980 | - | -2.4 | |||
4,084,005 | + | +1.0 | |||
4,084,005 | + | +0.9 | |||
4,084,009 | + | +0.0 | |||
4,084,017 | + | +0.9 | |||
4,084,023 | + | +0.9 | |||
4,084,023 | + | -0.1 | |||
4,084,135 | + | fdhD | b3895 | 0.12 | +1.4 |
4,084,139 | + | fdhD | b3895 | 0.12 | +0.2 |
4,084,197 | + | fdhD | b3895 | 0.19 | -1.4 |
4,084,206 | - | fdhD | b3895 | 0.20 | +1.2 |
4,084,209 | + | fdhD | b3895 | 0.20 | +2.4 |
4,084,261 | - | fdhD | b3895 | 0.27 | +0.5 |
4,084,316 | - | fdhD | b3895 | 0.33 | +1.1 |
4,084,316 | - | fdhD | b3895 | 0.33 | -1.1 |
4,084,366 | - | fdhD | b3895 | 0.39 | +0.4 |
4,084,410 | - | fdhD | b3895 | 0.44 | +0.4 |
4,084,410 | - | fdhD | b3895 | 0.44 | -0.0 |
4,084,455 | + | fdhD | b3895 | 0.50 | -0.8 |
4,084,455 | + | fdhD | b3895 | 0.50 | -0.2 |
4,084,469 | + | fdhD | b3895 | 0.52 | +0.7 |
4,084,541 | + | fdhD | b3895 | 0.60 | +1.7 |
4,084,541 | + | fdhD | b3895 | 0.60 | +0.9 |
4,084,549 | - | fdhD | b3895 | 0.61 | -0.8 |
4,084,549 | - | fdhD | b3895 | 0.61 | +1.6 |
4,084,626 | - | fdhD | b3895 | 0.70 | +1.1 |
4,084,648 | + | fdhD | b3895 | 0.73 | +1.1 |
4,084,648 | + | fdhD | b3895 | 0.73 | +2.9 |
4,084,661 | + | fdhD | b3895 | 0.75 | -2.5 |
4,084,673 | + | fdhD | b3895 | 0.76 | -0.4 |
4,084,728 | + | fdhD | b3895 | 0.83 | +2.4 |
4,084,758 | + | fdhD | b3895 | 0.86 | +1.3 |
4,084,758 | + | fdhD | b3895 | 0.86 | +3.2 |
4,084,771 | + | fdhD | b3895 | 0.88 | -2.0 |
4,084,774 | + | fdhD | b3895 | 0.88 | +0.5 |
4,084,775 | + | fdhD | b3895 | 0.88 | +1.8 |
4,084,775 | + | fdhD | b3895 | 0.88 | -0.3 |
4,084,775 | + | fdhD | b3895 | 0.88 | +0.7 |
4,084,781 | + | fdhD | b3895 | 0.89 | +0.2 |
4,084,786 | + | fdhD | b3895 | 0.90 | +2.2 |
4,084,794 | + | +0.8 | |||
4,084,794 | + | +2.1 | |||
4,084,794 | + | +0.1 | |||
4,084,797 | + | +1.2 | |||
4,084,799 | + | +1.4 | |||
4,084,799 | + | +1.7 | |||
4,084,799 | + | +1.8 | |||
4,084,799 | + | +2.0 | |||
4,084,799 | + | +1.2 | |||
4,084,799 | + | +2.1 | |||
4,084,807 | + | +0.8 | |||
4,084,817 | + | +0.4 | |||
4,084,827 | + | +1.4 | |||
4,084,833 | + | +1.2 | |||
4,084,833 | + | +0.5 | |||
4,084,838 | + | -0.1 | |||
4,084,838 | + | +1.4 | |||
4,084,839 | + | +2.8 | |||
4,084,839 | + | +0.6 | |||
4,084,839 | + | +1.0 | |||
4,084,839 | + | -0.1 | |||
4,084,839 | + | +2.8 | |||
4,084,839 | + | +2.9 | |||
4,084,839 | + | +0.7 | |||
4,084,840 | + | +0.5 | |||
4,084,840 | + | -0.4 | |||
4,084,840 | + | +0.7 | |||
4,084,840 | + | -0.2 | |||
4,084,840 | + | -1.5 | |||
4,084,840 | + | -2.0 | |||
4,084,840 | + | +1.7 | |||
4,084,840 | + | +1.6 | |||
4,084,840 | + | +1.5 | |||
4,084,840 | + | +1.4 | |||
4,084,840 | + | +0.7 | |||
4,084,840 | + | +0.6 | |||
4,084,840 | + | +0.7 | |||
4,084,844 | + | +0.4 | |||
4,084,844 | + | +0.9 | |||
4,084,849 | + | +1.4 | |||
4,085,040 | - | +1.4 | |||
4,085,058 | - | -0.2 | |||
4,085,059 | - | +0.4 | |||
4,085,067 | - | -0.6 | |||
4,085,067 | - | -0.5 | |||
4,085,071 | - | +1.8 | |||
4,085,079 | - | +1.4 | |||
4,085,083 | - | +1.4 | |||
4,085,085 | - | -0.1 | |||
4,085,087 | - | -2.1 | |||
4,085,094 | - | -1.0 | |||
4,085,095 | + | +1.4 | |||
4,085,152 | + | yiiG | b3896 | 0.12 | +1.4 |
4,085,165 | + | yiiG | b3896 | 0.13 | -0.2 |
4,085,165 | + | yiiG | b3896 | 0.13 | +0.4 |
4,085,175 | - | yiiG | b3896 | 0.14 | -1.1 |
4,085,175 | - | yiiG | b3896 | 0.14 | -1.6 |
4,085,214 | + | yiiG | b3896 | 0.18 | +0.4 |
4,085,227 | - | yiiG | b3896 | 0.19 | -0.5 |
4,085,291 | - | yiiG | b3896 | 0.25 | +0.9 |
4,085,301 | - | yiiG | b3896 | 0.26 | +0.6 |
4,085,301 | - | yiiG | b3896 | 0.26 | -0.3 |
4,085,323 | - | yiiG | b3896 | 0.28 | -0.5 |
4,085,328 | - | yiiG | b3896 | 0.29 | +1.4 |
4,085,381 | - | yiiG | b3896 | 0.34 | +1.4 |
4,085,381 | - | yiiG | b3896 | 0.34 | +1.4 |
4,085,441 | + | yiiG | b3896 | 0.39 | -1.0 |
4,085,444 | + | yiiG | b3896 | 0.40 | -0.3 |
4,085,444 | + | yiiG | b3896 | 0.40 | -2.2 |
4,085,449 | + | yiiG | b3896 | 0.40 | -1.2 |
4,085,449 | + | yiiG | b3896 | 0.40 | -0.6 |
4,085,454 | + | yiiG | b3896 | 0.41 | +0.1 |
4,085,454 | + | yiiG | b3896 | 0.41 | +0.4 |
4,085,455 | + | yiiG | b3896 | 0.41 | +1.4 |
4,085,457 | + | yiiG | b3896 | 0.41 | -0.1 |
4,085,463 | - | yiiG | b3896 | 0.41 | -1.6 |
4,085,464 | + | yiiG | b3896 | 0.42 | -0.5 |
4,085,466 | + | yiiG | b3896 | 0.42 | -1.0 |
4,085,466 | + | yiiG | b3896 | 0.42 | +1.4 |
4,085,467 | + | yiiG | b3896 | 0.42 | -1.0 |
4,085,477 | + | +0.1 | |||
4,085,483 | + | yiiG | b3896 | 0.43 | -0.6 |
4,085,483 | + | yiiG | b3896 | 0.43 | +0.7 |
4,085,483 | - | yiiG | b3896 | 0.43 | -0.6 |
4,085,489 | + | yiiG | b3896 | 0.44 | -0.6 |
4,085,493 | - | yiiG | b3896 | 0.44 | +1.4 |
4,085,494 | + | yiiG | b3896 | 0.44 | -0.6 |
4,085,496 | - | yiiG | b3896 | 0.45 | -0.2 |
4,085,499 | + | yiiG | b3896 | 0.45 | -0.2 |
4,085,499 | + | yiiG | b3896 | 0.45 | +1.4 |
4,085,499 | + | yiiG | b3896 | 0.45 | +1.0 |
4,085,510 | + | yiiG | b3896 | 0.46 | +0.4 |
4,085,510 | + | yiiG | b3896 | 0.46 | -3.0 |
4,085,510 | + | yiiG | b3896 | 0.46 | +1.4 |
4,085,510 | + | yiiG | b3896 | 0.46 | -0.8 |
4,085,510 | + | yiiG | b3896 | 0.46 | -1.0 |
4,085,599 | - | yiiG | b3896 | 0.54 | +0.4 |
4,085,621 | + | yiiG | b3896 | 0.56 | +0.5 |
4,085,621 | + | yiiG | b3896 | 0.56 | +1.9 |
4,085,621 | + | yiiG | b3896 | 0.56 | +0.9 |
4,085,621 | + | yiiG | b3896 | 0.56 | -2.0 |
4,085,621 | + | yiiG | b3896 | 0.56 | -1.5 |
4,085,629 | - | yiiG | b3896 | 0.57 | +1.4 |
4,085,629 | - | yiiG | b3896 | 0.57 | +1.4 |
4,085,631 | + | yiiG | b3896 | 0.57 | +1.7 |
4,085,633 | + | yiiG | b3896 | 0.58 | +0.4 |
4,085,633 | + | yiiG | b3896 | 0.58 | +1.0 |
4,085,639 | + | yiiG | b3896 | 0.58 | +0.6 |
4,085,639 | + | yiiG | b3896 | 0.58 | +0.5 |
4,085,675 | + | yiiG | b3896 | 0.62 | -1.0 |
4,085,675 | + | yiiG | b3896 | 0.62 | -0.8 |
4,085,700 | + | yiiG | b3896 | 0.64 | +1.4 |
4,085,722 | + | yiiG | b3896 | 0.66 | +0.4 |
4,085,722 | + | yiiG | b3896 | 0.66 | -1.0 |
4,085,724 | + | yiiG | b3896 | 0.66 | +1.4 |
4,085,729 | + | yiiG | b3896 | 0.67 | -1.3 |
4,085,729 | + | yiiG | b3896 | 0.67 | -0.2 |
4,085,735 | - | yiiG | b3896 | 0.67 | +1.4 |
4,085,735 | - | yiiG | b3896 | 0.67 | +1.4 |
4,085,735 | - | yiiG | b3896 | 0.67 | +1.4 |
4,085,743 | - | yiiG | b3896 | 0.68 | +1.4 |
4,085,745 | + | yiiG | b3896 | 0.68 | -0.2 |
4,085,745 | - | yiiG | b3896 | 0.68 | +1.4 |
4,085,760 | + | yiiG | b3896 | 0.70 | +3.4 |
4,085,760 | + | yiiG | b3896 | 0.70 | -2.0 |
4,085,774 | + | yiiG | b3896 | 0.71 | -2.3 |
4,085,781 | - | yiiG | b3896 | 0.72 | -0.2 |
4,085,781 | - | yiiG | b3896 | 0.72 | -1.0 |
4,085,800 | - | yiiG | b3896 | 0.73 | +0.4 |
4,085,813 | + | yiiG | b3896 | 0.75 | -2.0 |
4,085,829 | + | yiiG | b3896 | 0.76 | +0.4 |
4,085,834 | - | yiiG | b3896 | 0.77 | +1.4 |
4,085,838 | + | yiiG | b3896 | 0.77 | +0.6 |
4,085,838 | + | yiiG | b3896 | 0.77 | +1.0 |
4,085,838 | + | yiiG | b3896 | 0.77 | -1.2 |
4,085,844 | + | yiiG | b3896 | 0.78 | -3.0 |
4,085,849 | + | yiiG | b3896 | 0.78 | -1.2 |
4,085,849 | + | yiiG | b3896 | 0.78 | -0.7 |
4,085,857 | - | yiiG | b3896 | 0.79 | +0.4 |
4,085,857 | - | yiiG | b3896 | 0.79 | -2.2 |
4,085,857 | - | yiiG | b3896 | 0.79 | -1.2 |
4,085,857 | - | yiiG | b3896 | 0.79 | -2.2 |
4,085,857 | - | yiiG | b3896 | 0.79 | +1.9 |
4,085,857 | - | yiiG | b3896 | 0.79 | -0.6 |
4,085,857 | - | yiiG | b3896 | 0.79 | +0.9 |
4,085,857 | - | yiiG | b3896 | 0.79 | +1.4 |
4,085,857 | - | yiiG | b3896 | 0.79 | -0.5 |
4,085,857 | - | yiiG | b3896 | 0.79 | -1.5 |
4,085,868 | - | yiiG | b3896 | 0.80 | -2.5 |
4,085,868 | - | yiiG | b3896 | 0.80 | -1.2 |
Or see this region's nucleotide sequence