Strain Fitness in Escherichia coli BW25113 around b1993

Experiment: LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcobT and cobS are separated by 11 nucleotidescobS and cobU overlap by 4 nucleotidescobU and yeeH are separated by 303 nucleotidesyeeH and insH-6 are separated by 150 nucleotides b1991: cobT - nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferase (NCBI), at 2,061,412 to 2,062,491 cobT b1992: cobS - cobalamin synthase (NCBI), at 2,062,503 to 2,063,246 cobS b1993: cobU - adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase (NCBI), at 2,063,243 to 2,063,788 cobU b4639: yeeH - no description, at 2,064,092 to 2,064,178 yeeH b1994: insH-6 - CP4-44 prophage; IS5 transposase and trans-activator (NCBI), at 2,064,329 to 2,065,345 insH-6 Position (kb) 2063 2064Strain fitness (log2 ratio) -3 -2 -1 0 1at 2062.333 kb on + strand, within cobTat 2062.333 kb on + strand, within cobTat 2062.357 kb on - strand, within cobTat 2062.416 kb on - strandat 2062.704 kb on + strand, within cobSat 2063.068 kb on + strand, within cobSat 2063.182 kb on + strandat 2063.182 kb on - strandat 2063.203 kb on - strandat 2063.378 kb on - strand, within cobUat 2063.378 kb on - strand, within cobUat 2063.390 kb on + strand, within cobUat 2063.527 kb on + strand, within cobUat 2063.705 kb on - strand, within cobUat 2063.710 kb on + strand, within cobUat 2063.728 kb on - strand, within cobUat 2063.728 kb on - strand, within cobUat 2063.728 kb on - strand, within cobUat 2063.728 kb on - strand, within cobUat 2063.764 kb on - strandat 2063.882 kb on - strandat 2063.882 kb on - strandat 2064.082 kb on - strandat 2064.082 kb on - strandat 2064.179 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
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2,062,333 + cobT b1991 0.85 -2.7
2,062,333 + cobT b1991 0.85 +0.2
2,062,357 - cobT b1991 0.88 -1.9
2,062,416 - -1.9
2,062,704 + cobS b1992 0.27 -0.5
2,063,068 + cobS b1992 0.76 +1.1
2,063,182 + +0.1
2,063,182 - +0.8
2,063,203 - -2.2
2,063,378 - cobU b1993 0.25 -2.7
2,063,378 - cobU b1993 0.25 -3.1
2,063,390 + cobU b1993 0.27 -1.7
2,063,527 + cobU b1993 0.52 +1.6
2,063,705 - cobU b1993 0.85 -0.4
2,063,710 + cobU b1993 0.86 +0.3
2,063,728 - cobU b1993 0.89 +0.4
2,063,728 - cobU b1993 0.89 -0.4
2,063,728 - cobU b1993 0.89 -0.9
2,063,728 - cobU b1993 0.89 -2.6
2,063,764 - -0.3
2,063,882 - +0.9
2,063,882 - -0.9
2,064,082 - -1.9
2,064,082 - -1.4
2,064,179 - -1.7

Or see this region's nucleotide sequence