Strain Fitness in Pseudomonas putida KT2440 around PP_4735

Experiment: Adaptation in M9 media timecourse 1; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 1; day 3
5,382,589	+				-0.9
5,382,590	-		PP_4734	0.10	+0.5
5,382,590	-		PP_4734	0.10	+0.2
5,382,652	+		PP_4734	0.18	+0.9
5,382,652	+		PP_4734	0.18	-0.1
5,382,652	+		PP_4734	0.18	-0.0
5,382,706	+		PP_4734	0.25	+0.6
5,382,706	+		PP_4734	0.25	+0.7
5,382,706	+		PP_4734	0.25	+0.8
5,382,706	+		PP_4734	0.25	+0.8
5,382,706	+		PP_4734	0.25	+0.7
5,382,706	+		PP_4734	0.25	+1.9
5,382,707	-		PP_4734	0.25	+1.2
5,382,868	+		PP_4734	0.46	-0.3
5,382,868	+		PP_4734	0.46	-1.0
5,382,869	-		PP_4734	0.46	-0.1
5,382,869	-		PP_4734	0.46	-0.9
5,382,869	-		PP_4734	0.46	-0.9
5,382,940	+		PP_4734	0.56	-0.2
5,382,941	-		PP_4734	0.56	+1.1
5,382,941	-		PP_4734	0.56	+1.3
5,382,941	-		PP_4734	0.56	-0.3
5,382,941	-		PP_4734	0.56	-0.0
5,382,941	-		PP_4734	0.56	+0.5
5,382,944	-		PP_4734	0.56	+0.8
5,383,264	-				+0.3
5,383,264	-				-1.0
5,383,264	-				-0.2
5,383,324	-				-0.3
5,383,324	-				-0.0
5,383,324	-				+0.1
5,383,400	-				+1.0
5,383,457	+				+0.7
5,383,522	+				-0.3
5,383,522	+				+1.1
5,383,523	-				+1.4
5,383,536	+				-0.7
5,383,537	-				-0.2
5,383,558	+				-0.5
5,383,558	+				+0.0
5,383,558	+				+0.2
5,383,559	-				-0.1
5,383,559	-				-0.2
5,383,559	-				-0.6
5,383,559	-				-0.7
5,383,559	-				-1.0
5,383,659	-				+0.4
5,383,747	+		PP_4735	0.13	+0.1
5,383,807	+		PP_4735	0.16	+1.2
5,383,808	-		PP_4735	0.16	+0.9
5,383,999	+		PP_4735	0.28	-0.8
5,384,000	-		PP_4735	0.28	-0.5
5,384,000	-		PP_4735	0.28	-0.2
5,384,000	-		PP_4735	0.28	-1.0
5,384,251	+		PP_4735	0.43	-0.1
5,384,252	-		PP_4735	0.43	+0.1
5,384,252	-		PP_4735	0.43	+0.0
5,384,425	+		PP_4735	0.53	-0.2
5,384,426	-		PP_4735	0.53	+0.4
5,384,539	+		PP_4735	0.60	+0.1
5,384,539	+		PP_4735	0.60	-0.5
5,384,539	+		PP_4735	0.60	+0.1
5,384,539	+		PP_4735	0.60	-0.5
5,384,540	-		PP_4735	0.60	-0.1
5,384,730	+		PP_4735	0.71	-1.3
5,384,815	+		PP_4735	0.76	+0.2
5,384,815	+		PP_4735	0.76	-0.3
5,384,816	-		PP_4735	0.77	-0.2
5,385,026	+		PP_4735	0.89	+0.7
5,385,027	-		PP_4735	0.89	-1.1
5,385,176	-				-0.4
5,385,176	-				+0.0
5,385,294	+				-0.5
5,385,340	-				-1.0
5,385,519	+		PP_4736	0.22	+0.6
5,385,519	+		PP_4736	0.22	+1.6
5,385,520	-		PP_4736	0.22	+0.1
5,385,520	-		PP_4736	0.22	-0.9
5,385,654	+		PP_4736	0.34	+0.0
5,385,654	+		PP_4736	0.34	+0.4
5,385,654	+		PP_4736	0.34	-0.1
5,385,654	+		PP_4736	0.34	+0.7
5,385,654	+		PP_4736	0.34	+1.4
5,385,654	+		PP_4736	0.34	-0.2
5,385,654	+		PP_4736	0.34	-1.7
5,385,654	+		PP_4736	0.34	+0.0
5,385,654	+		PP_4736	0.34	+0.1
5,385,655	-		PP_4736	0.34	+0.2
5,385,655	-		PP_4736	0.34	+0.4
5,385,655	-		PP_4736	0.34	-2.8
5,385,655	-		PP_4736	0.34	-0.8
5,385,655	-		PP_4736	0.34	-0.2
5,385,655	-		PP_4736	0.34	-1.6
5,385,655	-		PP_4736	0.34	+2.9
5,385,655	-		PP_4736	0.34	-1.3
5,385,655	-		PP_4736	0.34	+0.7
5,385,655	-		PP_4736	0.34	+0.6
5,385,655	-		PP_4736	0.34	+0.1
5,385,658	+		PP_4736	0.34	+0.2
5,385,658	+		PP_4736	0.34	-0.6
5,385,658	+		PP_4736	0.34	+0.2
5,385,659	-		PP_4736	0.34	-0.9
5,385,659	-		PP_4736	0.34	+0.6
5,385,898	-		PP_4736	0.55	-0.9
5,385,898	-		PP_4736	0.55	+0.7
5,385,927	+		PP_4736	0.57	+0.0
5,385,927	+		PP_4736	0.57	-0.3
5,385,927	+		PP_4736	0.57	-0.1
5,385,928	-		PP_4736	0.57	-0.6
5,385,928	-		PP_4736	0.57	+0.1