Experiment: Adaptation in M9 media timecourse 1; day 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4684 and PP_4685 are separated by 158 nucleotides PP_4685 and PP_4686 are separated by 180 nucleotides
PP_4684: PP_4684 - conserved protein of unknown function with kinase-like domain, at 5,323,367 to 5,324,929
_4684
PP_4685: PP_4685 - conserved protein of unknown function, at 5,325,088 to 5,325,366
_4685
PP_4686: PP_4686 - putative lipoprotein, at 5,325,547 to 5,326,431
_4686
Position (kb) 5325
5326 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5324.180 kb on + strand, within PP_4684 at 5324.202 kb on - strand, within PP_4684 at 5324.228 kb on + strand, within PP_4684 at 5324.334 kb on - strand, within PP_4684 at 5324.334 kb on - strand, within PP_4684 at 5324.354 kb on + strand, within PP_4684 at 5324.473 kb on - strand, within PP_4684 at 5324.479 kb on + strand, within PP_4684 at 5324.535 kb on + strand, within PP_4684 at 5324.535 kb on + strand, within PP_4684 at 5324.535 kb on + strand, within PP_4684 at 5324.535 kb on + strand, within PP_4684 at 5324.535 kb on + strand, within PP_4684 at 5324.536 kb on - strand, within PP_4684 at 5324.537 kb on + strand, within PP_4684 at 5324.537 kb on + strand, within PP_4684 at 5324.537 kb on + strand, within PP_4684 at 5324.537 kb on + strand, within PP_4684 at 5324.537 kb on + strand, within PP_4684 at 5324.537 kb on + strand, within PP_4684 at 5324.537 kb on + strand, within PP_4684 at 5324.538 kb on - strand, within PP_4684 at 5324.538 kb on - strand, within PP_4684 at 5324.538 kb on - strand, within PP_4684 at 5324.564 kb on + strand, within PP_4684 at 5324.564 kb on + strand, within PP_4684 at 5324.565 kb on - strand, within PP_4684 at 5324.633 kb on + strand, within PP_4684 at 5324.634 kb on - strand, within PP_4684 at 5324.927 kb on + strand at 5324.927 kb on + strand at 5324.928 kb on - strand at 5324.928 kb on - strand at 5324.928 kb on - strand at 5324.928 kb on - strand at 5325.049 kb on + strand at 5325.202 kb on + strand, within PP_4685 at 5325.203 kb on - strand, within PP_4685 at 5325.250 kb on + strand, within PP_4685 at 5325.250 kb on + strand, within PP_4685 at 5325.250 kb on + strand, within PP_4685 at 5325.250 kb on + strand, within PP_4685 at 5325.250 kb on + strand, within PP_4685 at 5325.251 kb on - strand, within PP_4685 at 5325.251 kb on - strand, within PP_4685 at 5325.251 kb on - strand, within PP_4685 at 5325.251 kb on - strand, within PP_4685 at 5325.251 kb on - strand, within PP_4685 at 5325.251 kb on - strand, within PP_4685 at 5325.294 kb on - strand, within PP_4685 at 5325.364 kb on + strand at 5325.443 kb on + strand at 5325.443 kb on + strand at 5325.443 kb on + strand at 5325.443 kb on + strand at 5325.443 kb on + strand at 5325.443 kb on + strand at 5325.444 kb on - strand at 5325.444 kb on - strand at 5325.444 kb on - strand at 5325.444 kb on - strand at 5325.471 kb on + strand at 5325.471 kb on + strand at 5325.471 kb on + strand at 5325.472 kb on - strand at 5325.488 kb on - strand at 5325.488 kb on - strand at 5325.569 kb on + strand at 5325.570 kb on - strand at 5325.570 kb on - strand at 5325.570 kb on - strand at 5325.605 kb on + strand at 5325.605 kb on + strand at 5325.605 kb on + strand at 5325.606 kb on - strand at 5325.606 kb on - strand at 5325.606 kb on - strand at 5325.606 kb on - strand at 5325.606 kb on - strand at 5325.606 kb on - strand at 5325.656 kb on - strand, within PP_4686 at 5325.656 kb on - strand, within PP_4686 at 5325.700 kb on + strand, within PP_4686 at 5325.700 kb on + strand, within PP_4686 at 5325.701 kb on - strand, within PP_4686 at 5325.725 kb on + strand, within PP_4686 at 5325.725 kb on + strand, within PP_4686 at 5325.725 kb on + strand, within PP_4686 at 5325.725 kb on + strand, within PP_4686 at 5325.725 kb on + strand, within PP_4686 at 5325.725 kb on + strand, within PP_4686 at 5325.726 kb on - strand, within PP_4686 at 5325.726 kb on - strand, within PP_4686 at 5325.726 kb on - strand, within PP_4686 at 5326.016 kb on + strand, within PP_4686 at 5326.273 kb on + strand, within PP_4686 at 5326.273 kb on + strand, within PP_4686 at 5326.273 kb on + strand, within PP_4686 at 5326.273 kb on + strand, within PP_4686 at 5326.274 kb on - strand, within PP_4686 at 5326.274 kb on - strand, within PP_4686 at 5326.274 kb on - strand, within PP_4686 at 5326.274 kb on - strand, within PP_4686 at 5326.274 kb on - strand, within PP_4686
Per-strain Table
Position Strand Gene LocusTag Fraction Adaptation in M9 media timecourse 1; day 3 remove 5,324,180 + PP_4684 0.52 -2.3 5,324,202 - PP_4684 0.53 -0.2 5,324,228 + PP_4684 0.55 +0.1 5,324,334 - PP_4684 0.62 -0.3 5,324,334 - PP_4684 0.62 +0.2 5,324,354 + PP_4684 0.63 -2.2 5,324,473 - PP_4684 0.71 +0.7 5,324,479 + PP_4684 0.71 +2.9 5,324,535 + PP_4684 0.75 +0.4 5,324,535 + PP_4684 0.75 -1.0 5,324,535 + PP_4684 0.75 +1.4 5,324,535 + PP_4684 0.75 -1.1 5,324,535 + PP_4684 0.75 +0.2 5,324,536 - PP_4684 0.75 -1.1 5,324,537 + PP_4684 0.75 +2.4 5,324,537 + PP_4684 0.75 -0.6 5,324,537 + PP_4684 0.75 -0.6 5,324,537 + PP_4684 0.75 -0.8 5,324,537 + PP_4684 0.75 -1.1 5,324,537 + PP_4684 0.75 -0.6 5,324,537 + PP_4684 0.75 -0.3 5,324,538 - PP_4684 0.75 +0.3 5,324,538 - PP_4684 0.75 +1.1 5,324,538 - PP_4684 0.75 -0.2 5,324,564 + PP_4684 0.77 +1.0 5,324,564 + PP_4684 0.77 -0.8 5,324,565 - PP_4684 0.77 +1.0 5,324,633 + PP_4684 0.81 +0.4 5,324,634 - PP_4684 0.81 -0.6 5,324,927 + +0.4 5,324,927 + -0.7 5,324,928 - -0.7 5,324,928 - -0.7 5,324,928 - +1.0 5,324,928 - -0.6 5,325,049 + -1.0 5,325,202 + PP_4685 0.41 -0.3 5,325,203 - PP_4685 0.41 -0.8 5,325,250 + PP_4685 0.58 -1.5 5,325,250 + PP_4685 0.58 -0.2 5,325,250 + PP_4685 0.58 -0.4 5,325,250 + PP_4685 0.58 +0.6 5,325,250 + PP_4685 0.58 -1.0 5,325,251 - PP_4685 0.58 -0.8 5,325,251 - PP_4685 0.58 -1.7 5,325,251 - PP_4685 0.58 -1.0 5,325,251 - PP_4685 0.58 +0.5 5,325,251 - PP_4685 0.58 -2.1 5,325,251 - PP_4685 0.58 -0.4 5,325,294 - PP_4685 0.74 -1.2 5,325,364 + -1.0 5,325,443 + -1.5 5,325,443 + +1.9 5,325,443 + -0.9 5,325,443 + -1.6 5,325,443 + -0.5 5,325,443 + -0.3 5,325,444 - -0.8 5,325,444 - -0.7 5,325,444 - -1.6 5,325,444 - -0.7 5,325,471 + -1.6 5,325,471 + +0.3 5,325,471 + -0.3 5,325,472 - -0.1 5,325,488 - -0.1 5,325,488 - -1.1 5,325,569 + +0.2 5,325,570 - +0.9 5,325,570 - -1.0 5,325,570 - -1.5 5,325,605 + -0.0 5,325,605 + -1.5 5,325,605 + -1.0 5,325,606 - -0.4 5,325,606 - -0.4 5,325,606 - +0.1 5,325,606 - -0.4 5,325,606 - -1.0 5,325,606 - +0.2 5,325,656 - PP_4686 0.12 -0.4 5,325,656 - PP_4686 0.12 +0.4 5,325,700 + PP_4686 0.17 -1.2 5,325,700 + PP_4686 0.17 -0.5 5,325,701 - PP_4686 0.17 -0.3 5,325,725 + PP_4686 0.20 -0.7 5,325,725 + PP_4686 0.20 -0.5 5,325,725 + PP_4686 0.20 -1.2 5,325,725 + PP_4686 0.20 +0.2 5,325,725 + PP_4686 0.20 -0.3 5,325,725 + PP_4686 0.20 -2.2 5,325,726 - PP_4686 0.20 -0.6 5,325,726 - PP_4686 0.20 +1.6 5,325,726 - PP_4686 0.20 +0.1 5,326,016 + PP_4686 0.53 -0.3 5,326,273 + PP_4686 0.82 -0.2 5,326,273 + PP_4686 0.82 -1.0 5,326,273 + PP_4686 0.82 -1.4 5,326,273 + PP_4686 0.82 -0.2 5,326,274 - PP_4686 0.82 -0.1 5,326,274 - PP_4686 0.82 -0.3 5,326,274 - PP_4686 0.82 +0.1 5,326,274 - PP_4686 0.82 -0.9 5,326,274 - PP_4686 0.82 +0.6
Or see this region's nucleotide sequence