Strain Fitness in Pseudomonas putida KT2440 around PP_4215

Experiment: Adaptation in M9 media timecourse 1; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 1; day 3
4,761,732	+		PP_4214	0.30	-2.4
4,761,789	+		PP_4214	0.35	-0.9
4,761,789	+		PP_4214	0.35	-1.2
4,761,813	+		PP_4214	0.37	-0.9
4,761,850	+		PP_4214	0.39	-0.5
4,761,851	-		PP_4214	0.40	+1.9
4,761,892	+		PP_4214	0.43	+0.6
4,761,895	+		PP_4214	0.43	+1.4
4,762,263	+		PP_4214	0.72	-0.3
4,762,365	+		PP_4214	0.79	-1.0
4,762,480	+		PP_4214	0.88	+0.1
4,762,481	-				+2.9
4,762,657	+				-1.4
4,762,945	+		PP_4215	0.31	-1.5
4,762,975	+		PP_4215	0.34	+1.4
4,762,975	+		PP_4215	0.34	-1.6
4,762,975	+		PP_4215	0.34	-1.4
4,762,975	+		PP_4215	0.34	-0.9
4,762,975	+		PP_4215	0.34	-0.1
4,762,976	-				+2.9
4,763,053	+		PP_4215	0.43	-1.3
4,763,053	+		PP_4215	0.43	-0.6
4,763,053	+		PP_4215	0.43	-0.6
4,763,053	+		PP_4215	0.43	-1.1
4,763,110	+		PP_4215	0.49	-0.8
4,763,110	+		PP_4215	0.49	-0.5
4,763,338	+		PP_4215	0.75	-0.4
4,763,338	+		PP_4215	0.75	-1.1
4,763,339	-		PP_4215	0.75	-0.2
4,763,359	+		PP_4215	0.77	-0.1
4,763,359	+		PP_4215	0.77	-0.2
4,763,359	+		PP_4215	0.77	+0.7