Strain Fitness in Pseudomonas putida KT2440 around PP_4148

Experiment: Adaptation in M9 media timecourse 1; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 1; day 3
4,686,056	-		PP_4147	0.47	-0.1
4,686,056	-		PP_4147	0.47	+0.7
4,686,205	+		PP_4147	0.55	-1.1
4,686,206	-		PP_4147	0.55	-0.6
4,686,241	+		PP_4147	0.57	+0.3
4,686,241	+		PP_4147	0.57	-1.1
4,686,260	-		PP_4147	0.58	+0.1
4,686,260	-		PP_4147	0.58	-3.2
4,686,353	+		PP_4147	0.63	-0.8
4,686,353	+		PP_4147	0.63	-0.6
4,686,425	-		PP_4147	0.67	-0.8
4,686,425	-		PP_4147	0.67	-0.5
4,686,425	-		PP_4147	0.67	+0.3
4,686,425	-		PP_4147	0.67	-0.1
4,686,610	+		PP_4147	0.77	+0.1
4,686,610	+		PP_4147	0.77	+1.9
4,686,610	+		PP_4147	0.77	-0.1
4,686,611	-		PP_4147	0.78	-0.1
4,686,611	-		PP_4147	0.78	+0.7
4,686,614	+		PP_4147	0.78	-0.7
4,686,615	-		PP_4147	0.78	-0.3
4,686,637	+		PP_4147	0.79	+0.8
4,686,856	+				-1.1
4,686,856	+				-0.5
4,686,856	+				+1.1
4,686,859	+				-2.0
4,686,859	+				-1.1
4,686,859	+				+0.7
4,686,859	+				+0.4
4,686,860	-				-1.2
4,686,901	+				+0.5
4,686,940	+				+0.6
4,686,940	+				+0.6
4,686,941	-				-0.3
4,686,941	-				-0.5
4,686,981	-				-1.5
4,687,021	+				+0.6
4,687,022	-				-0.5
4,687,035	-				-0.8
4,687,274	+		PP_4148	0.23	-0.7
4,687,274	+		PP_4148	0.23	-0.5
4,687,274	+		PP_4148	0.23	-0.1
4,687,275	-		PP_4148	0.23	-0.9
4,687,275	-		PP_4148	0.23	-1.1
4,687,326	-		PP_4148	0.28	-0.3
4,687,326	-				+3.9
4,687,439	+		PP_4148	0.39	-0.4
4,687,439	+		PP_4148	0.39	+0.6
4,687,439	+		PP_4148	0.39	-0.9
4,687,439	+		PP_4148	0.39	+0.0
4,687,439	+		PP_4148	0.39	-0.9
4,687,439	+		PP_4148	0.39	-0.6
4,687,440	-		PP_4148	0.39	-1.5
4,687,440	-		PP_4148	0.39	-0.1
4,687,530	-		PP_4148	0.47	-1.6
4,687,589	+		PP_4148	0.53	-1.0
4,687,667	+		PP_4148	0.60	-0.4
4,687,667	+		PP_4148	0.60	-1.7
4,687,668	-		PP_4148	0.60	-1.2
4,687,668	-		PP_4148	0.60	-0.8
4,687,772	+		PP_4148	0.70	-0.3
4,687,772	+		PP_4148	0.70	+0.4
4,687,773	-		PP_4148	0.70	-2.1
4,687,773	-		PP_4148	0.70	+0.1
4,688,051	+				-0.5
4,688,052	-				-0.8
4,688,052	-				-0.3
4,688,052	-				+0.5
4,688,052	-				-1.9
4,688,052	-				+0.2
4,688,263	-		PP_4149	0.16	-0.4
4,688,328	+		PP_4149	0.22	-1.2
4,688,329	-		PP_4149	0.22	-0.7
4,688,340	+		PP_4149	0.24	-0.2
4,688,340	+		PP_4149	0.24	-1.1
4,688,341	-		PP_4149	0.24	-0.8
4,688,341	-		PP_4149	0.24	-0.1
4,688,341	-		PP_4149	0.24	-2.0
4,688,418	+		PP_4149	0.31	-0.2
4,688,418	+		PP_4149	0.31	+1.4
4,688,418	+		PP_4149	0.31	-0.5
4,688,418	+		PP_4149	0.31	+1.9
4,688,419	-		PP_4149	0.31	-0.9
4,688,419	-				+0.4
4,688,419	-		PP_4149	0.31	-0.8
4,688,419	-		PP_4149	0.31	+0.9
4,688,512	-		PP_4149	0.40	-2.4
4,688,512	-		PP_4149	0.40	+0.1
4,688,602	-		PP_4149	0.49	+0.3
4,688,602	-		PP_4149	0.49	-2.0
4,688,602	-		PP_4149	0.49	-1.5
4,688,667	+		PP_4149	0.56	-0.2
4,688,667	+		PP_4149	0.56	-1.6
4,688,667	+		PP_4149	0.56	-0.5
4,688,668	-		PP_4149	0.56	-0.0
4,688,800	-		PP_4149	0.69	+0.1
4,688,848	-		PP_4149	0.73	-1.1