Strain Fitness in Pseudomonas putida KT2440 around PP_3878

Experiment: Adaptation in M9 media timecourse 1; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 1; day 3
4,398,155	+		PP_3877	0.47	-0.1
4,398,155	+		PP_3877	0.47	-0.4
4,398,155	+		PP_3877	0.47	+0.7
4,398,155	+		PP_3877	0.47	-0.5
4,398,156	-		PP_3877	0.47	-0.3
4,398,156	-		PP_3877	0.47	-0.2
4,398,289	-		PP_3877	0.57	-0.7
4,398,289	-		PP_3877	0.57	-0.1
4,398,486	+		PP_3877	0.72	+0.4
4,398,487	-		PP_3877	0.72	+0.4
4,398,674	-		PP_3877	0.86	-0.8
4,398,817	+				-0.5
4,398,818	-				-0.1
4,398,818	-				+0.4
4,398,818	-				-0.1
4,398,832	+				-0.4
4,398,833	-				-0.7
4,398,845	+				-0.1
4,399,141	+		PP_3878	0.23	+0.4
4,399,142	-		PP_3878	0.23	+0.4
4,399,171	+		PP_3878	0.26	-1.1
4,399,171	+		PP_3878	0.26	+0.5
4,399,171	+		PP_3878	0.26	+0.6
4,399,172	-		PP_3878	0.26	+0.4
4,399,172	-		PP_3878	0.26	+0.4
4,399,341	+		PP_3878	0.44	+0.7
4,399,342	-		PP_3878	0.44	-0.4
4,399,342	-		PP_3878	0.44	+0.7
4,399,394	-		PP_3878	0.49	+0.6
4,399,553	+		PP_3878	0.65	+1.3
4,399,553	+		PP_3878	0.65	-0.1
4,399,554	-		PP_3878	0.65	+0.1
4,399,554	-		PP_3878	0.65	+0.5
4,399,579	+		PP_3878	0.68	-0.8
4,399,580	-		PP_3878	0.68	+1.1
4,399,580	-		PP_3878	0.68	+2.7
4,399,714	+		PP_3878	0.82	+0.5
4,399,729	+		PP_3878	0.83	+0.6
4,399,729	+		PP_3878	0.83	+0.9
4,399,729	+		PP_3878	0.83	-2.5
4,399,729	+		PP_3878	0.83	-0.1
4,399,729	+		PP_3878	0.83	+0.8
4,399,730	-		PP_3878	0.84	-0.0
4,399,835	+				+0.1
4,399,835	+				+0.2
4,399,836	-				-1.1
4,399,976	+				-1.2
4,399,976	+				-1.9
4,400,004	+				-0.3
4,400,005	-				-0.5
4,400,005	-				+0.1
4,400,091	+		PP_3879	0.16	+0.1
4,400,091	+		PP_3879	0.16	+2.7
4,400,092	-		PP_3879	0.16	+0.5
4,400,092	-		PP_3879	0.16	+0.2
4,400,092	-		PP_3879	0.16	-0.1
4,400,154	+		PP_3879	0.21	+0.0
4,400,155	-		PP_3879	0.21	-0.3
4,400,155	-		PP_3879	0.21	+0.9
4,400,241	+		PP_3879	0.28	+0.5
4,400,242	-		PP_3879	0.28	-0.1
4,400,242	-		PP_3879	0.28	+0.3
4,400,271	+		PP_3879	0.30	+0.5
4,400,271	+				+1.9
4,400,293	+		PP_3879	0.32	-0.2
4,400,294	-		PP_3879	0.32	+1.6
4,400,316	+		PP_3879	0.34	+0.8
4,400,317	-		PP_3879	0.34	-0.3
4,400,575	-		PP_3879	0.54	+0.2
4,400,575	-		PP_3879	0.54	+0.1
4,400,641	-		PP_3879	0.59	-0.7
4,400,641	-		PP_3879	0.59	-0.8
4,400,641	-		PP_3879	0.59	-0.3
4,400,641	-		PP_3879	0.59	-0.7
4,400,815	-		PP_3879	0.73	-0.6
4,400,865	+		PP_3879	0.77	+0.1
4,400,866	-				+0.1