Strain Fitness in Pseudomonas putida KT2440 around PP_3830

Experiment: Adaptation in M9 media timecourse 1; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 1; day 3
4,354,488	+		PP_3828	0.59	-0.1
4,354,488	+		PP_3828	0.59	+0.8
4,354,488	+		PP_3828	0.59	-0.2
4,354,489	-		PP_3828	0.59	-0.1
4,354,489	-		PP_3828	0.59	-1.6
4,354,616	+		PP_3828	0.75	-1.3
4,354,617	-		PP_3828	0.76	-1.6
4,354,617	-		PP_3828	0.76	+0.9
4,354,633	-		PP_3828	0.78	+0.0
4,354,745	+				-0.0
4,354,784	+				-1.9
4,354,784	+				+0.2
4,354,784	+				+0.2
4,354,784	+				-0.5
4,354,784	-				-0.5
4,354,785	-				-0.2
4,354,790	+				-0.1
4,354,791	-				+0.8
4,354,844	+				+0.4
4,354,993	+		PP_3829	0.28	+1.9
4,355,182	-		PP_3829	0.56	-0.7
4,355,205	+		PP_3829	0.59	+0.7
4,355,205	+		PP_3829	0.59	-0.7
4,355,206	-		PP_3829	0.59	-0.3
4,355,206	-		PP_3829	0.59	+2.9
4,355,301	-		PP_3829	0.73	-0.6
4,355,381	-		PP_3829	0.85	+0.2
4,355,697	-		PP_3830	0.20	-0.5
4,355,697	-		PP_3830	0.20	-0.3
4,355,697	-		PP_3830	0.20	+0.3
4,355,730	-		PP_3830	0.23	-1.2
4,355,730	-		PP_3830	0.23	+0.2
4,356,003	+		PP_3830	0.48	+2.9
4,356,051	+		PP_3830	0.52	+0.9
4,356,051	+		PP_3830	0.52	+0.5
4,356,051	+		PP_3830	0.52	-1.1
4,356,051	+		PP_3830	0.52	-0.3
4,356,051	+		PP_3830	0.52	+0.2
4,356,051	+		PP_3830	0.52	-0.2
4,356,051	+		PP_3830	0.52	-0.2
4,356,051	+		PP_3830	0.52	-0.3
4,356,052	-		PP_3830	0.52	-0.1
4,356,052	-		PP_3830	0.52	-0.5
4,356,052	-		PP_3830	0.52	-0.3
4,356,052	-		PP_3830	0.52	-1.2
4,356,052	-		PP_3830	0.52	-1.0
4,356,052	-		PP_3830	0.52	+0.5
4,356,052	-		PP_3830	0.52	-0.3
4,356,052	-		PP_3830	0.52	+0.4
4,356,052	-		PP_3830	0.52	-0.9
4,356,052	-		PP_3830	0.52	-0.8
4,356,053	+		PP_3830	0.52	+0.3
4,356,053	+		PP_3830	0.52	-1.6
4,356,053	+		PP_3830	0.52	-0.5
4,356,053	+		PP_3830	0.52	-1.2
4,356,053	+		PP_3830	0.52	+0.0
4,356,053	+		PP_3830	0.52	+1.7
4,356,053	+		PP_3830	0.52	+0.6
4,356,053	+		PP_3830	0.52	-0.9
4,356,053	+		PP_3830	0.52	-0.3
4,356,053	+		PP_3830	0.52	+0.3
4,356,053	+		PP_3830	0.52	+0.8
4,356,054	-		PP_3830	0.52	-1.1
4,356,054	-		PP_3830	0.52	+0.2
4,356,054	-		PP_3830	0.52	-0.5
4,356,054	-		PP_3830	0.52	-0.5
4,356,054	-		PP_3830	0.52	-0.5
4,356,211	+		PP_3830	0.67	+0.3
4,356,211	+		PP_3830	0.67	-0.4
4,356,236	+		PP_3830	0.69	-0.1
4,356,535	-				+1.1
4,356,591	+				-0.7
4,356,591	+				+0.9
4,356,591	+				-0.4
4,356,665	+				-0.3
4,356,665	+				-0.3
4,356,665	+				-1.8
4,356,666	-				-0.2
4,356,666	-				+0.1
4,356,722	+				-0.4
4,356,722	+				+0.1
4,356,723	-				-2.9
4,356,723	-				-0.4
4,356,723	-				-0.3
4,356,923	+		PP_3831	0.28	-0.0
4,357,076	+		PP_3831	0.43	+2.5
4,357,097	+		PP_3831	0.45	+0.4
4,357,098	-		PP_3831	0.46	+0.3
4,357,265	+		PP_3831	0.62	+1.3
4,357,292	-		PP_3831	0.65	-0.6
4,357,349	-		PP_3831	0.70	-0.5
4,357,361	+		PP_3831	0.71	+1.5
4,357,361	+		PP_3831	0.71	+1.2
4,357,362	-		PP_3831	0.71	-0.9
4,357,401	+		PP_3831	0.75	+2.3
4,357,402	-		PP_3831	0.75	+1.6
4,357,455	+				-0.2
4,357,487	-		PP_3831	0.84	-1.8
4,357,511	+		PP_3831	0.86	+2.0
4,357,511	+		PP_3831	0.86	+2.5
4,357,511	+		PP_3831	0.86	+0.3
4,357,512	-		PP_3831	0.86	-1.0
4,357,512	-		PP_3831	0.86	-1.2
4,357,538	+		PP_3831	0.89	+2.5
4,357,538	+		PP_3831	0.89	+2.5
4,357,538	+		PP_3831	0.89	+2.3
4,357,538	+		PP_3831	0.89	+2.4
4,357,539	-		PP_3831	0.89	-0.5
4,357,539	-		PP_3831	0.89	-3.4