Strain Fitness in Pseudomonas putida KT2440 around PP_3428

Experiment: Adaptation in M9 media timecourse 1; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 1; day 3
3,882,114	+		PP_3427	0.55	+0.5
3,882,367	+		PP_3427	0.72	-0.7
3,882,367	+		PP_3427	0.72	+1.3
3,882,367	+		PP_3427	0.72	+1.9
3,882,367	+		PP_3427	0.72	-1.5
3,882,449	+		PP_3427	0.78	+0.9
3,882,449	+		PP_3427	0.78	+0.4
3,882,450	-		PP_3427	0.78	+0.5
3,882,450	-		PP_3427	0.78	-0.9
3,882,450	-		PP_3427	0.78	-0.2
3,882,598	+		PP_3427	0.89	-0.7
3,882,608	+		PP_3427	0.89	-0.2
3,882,615	+		PP_3427	0.90	-1.3
3,882,615	+		PP_3427	0.90	-0.3
3,882,615	+		PP_3427	0.90	+0.2
3,882,642	+				-2.0
3,882,704	+				+0.2
3,882,851	+				-0.7
3,882,852	-				-1.3
3,882,864	-				-0.1
3,882,932	-				+0.4
3,883,001	-				+0.3
3,883,173	+		PP_3428	0.18	-0.3
3,883,173	+		PP_3428	0.18	-0.0
3,883,173	+		PP_3428	0.18	-1.2
3,883,173	+		PP_3428	0.18	+0.6
3,883,208	-		PP_3428	0.21	-0.1
3,883,225	+		PP_3428	0.23	-0.4
3,883,225	+		PP_3428	0.23	+0.4
3,883,439	-		PP_3428	0.43	+0.2
3,883,439	-		PP_3428	0.43	+0.8
3,883,471	+		PP_3428	0.46	+0.3
3,883,472	-		PP_3428	0.46	+0.4
3,883,472	-		PP_3428	0.46	-1.1
3,883,535	-		PP_3428	0.52	+0.5
3,883,535	-				+1.9
3,883,628	+		PP_3428	0.61	-0.1
3,883,628	+		PP_3428	0.61	+0.3
3,883,721	-		PP_3428	0.70	-0.0
3,883,727	+		PP_3428	0.71	-0.0
3,883,727	+		PP_3428	0.71	+0.1
3,883,728	-		PP_3428	0.71	-0.6
3,883,762	+		PP_3428	0.74	-0.3
3,883,763	-		PP_3428	0.74	-0.5
3,883,816	+		PP_3428	0.79	+0.4
3,883,816	+		PP_3428	0.79	-0.6
3,883,825	-		PP_3428	0.80	+0.7
3,883,825	-		PP_3428	0.80	+1.9
3,883,939	+				+1.1
3,883,976	+				-0.6
3,884,036	-				+0.4
3,884,182	-				-0.9
3,884,509	+		PP_3429	0.24	+0.1
3,884,844	+		PP_3429	0.45	-0.6
3,884,844	+				+2.9
3,884,847	-		PP_3429	0.45	-0.3
3,884,847	-				+0.9
3,884,847	-		PP_3429	0.45	+0.0
3,884,856	+		PP_3429	0.46	-1.0
3,884,856	+		PP_3429	0.46	-1.6
3,884,857	-		PP_3429	0.46	+0.4