Strain Fitness in Pseudomonas putida KT2440 around PP_2368

Experiment: Adaptation in M9 media timecourse 1; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 1; day 3
2,700,893	-		PP_2367	0.21	+0.2
2,700,893	-		PP_2367	0.21	+2.1
2,701,100	-		PP_2367	0.38	-0.6
2,701,148	+		PP_2367	0.43	-1.5
2,701,148	+		PP_2367	0.43	+0.3
2,701,148	+		PP_2367	0.43	-0.3
2,701,149	-		PP_2367	0.43	-0.2
2,701,149	-		PP_2367	0.43	-0.0
2,701,149	-		PP_2367	0.43	-0.3
2,701,149	-		PP_2367	0.43	+0.5
2,701,154	+		PP_2367	0.43	-1.3
2,701,155	-		PP_2367	0.43	-0.4
2,701,155	-		PP_2367	0.43	-0.4
2,701,155	-		PP_2367	0.43	-0.0
2,701,283	+		PP_2367	0.54	-0.4
2,701,535	+		PP_2367	0.75	+2.9
2,701,535	+		PP_2367	0.75	-0.4
2,701,536	-		PP_2367	0.75	-0.1
2,701,536	-		PP_2367	0.75	+0.6
2,701,538	+		PP_2367	0.75	+0.0
2,701,539	-		PP_2367	0.75	+0.1
2,701,539	-		PP_2367	0.75	+0.2
2,701,539	-		PP_2367	0.75	-1.6
2,701,539	-		PP_2367	0.75	+0.8
2,701,539	-		PP_2367	0.75	+1.0
2,701,670	+		PP_2367	0.86	+0.4
2,701,670	+		PP_2367	0.86	+0.1
2,701,671	-		PP_2367	0.87	+0.5
2,701,993	+		PP_2368	0.20	-0.0
2,701,993	+		PP_2368	0.20	-0.3
2,702,036	+		PP_2368	0.25	+0.1
2,702,037	-		PP_2368	0.25	-0.9
2,702,093	-		PP_2368	0.32	-0.8
2,702,107	+		PP_2368	0.34	-0.5
2,702,107	+		PP_2368	0.34	+0.2
2,702,107	+		PP_2368	0.34	-0.5
2,702,108	-		PP_2368	0.34	-0.9
2,702,108	-		PP_2368	0.34	-0.8
2,702,108	-		PP_2368	0.34	-0.3
2,702,167	+		PP_2368	0.41	-0.8
2,702,167	+		PP_2368	0.41	-0.3
2,702,311	+		PP_2368	0.59	-0.2
2,702,325	+		PP_2368	0.61	-0.4
2,702,431	+		PP_2368	0.74	-0.4
2,702,432	-		PP_2368	0.74	-0.2
2,702,432	-		PP_2368	0.74	-0.2
2,702,524	+		PP_2368	0.86	-2.8
2,702,525	-		PP_2368	0.86	-0.6
2,702,705	+				-0.3
2,702,706	-				-0.3
2,702,749	-				-1.0
2,702,776	+				+1.9
2,702,777	-				+1.5
2,702,781	-				-0.1
2,702,781	-				-0.4
2,702,860	+				+1.2
2,702,861	-				+0.9
2,702,986	+				-0.9
2,702,986	+				-0.2
2,702,987	-				+0.6
2,702,987	-				-0.4
2,702,987	-				+0.6
2,703,007	+				-0.1
2,703,076	+				+0.1
2,703,077	-				-0.5
2,703,143	-				+2.1
2,703,143	-				-0.5
2,703,146	+				-0.6
2,703,147	-				+0.6
2,703,200	+				+0.5
2,703,283	+		PP_2369	0.10	-0.8
2,703,284	-		PP_2369	0.11	-1.3
2,703,324	-		PP_2369	0.11	-0.1