Strain Fitness in Pseudomonas putida KT2440 around PP_1731

Experiment: Adaptation in M9 media timecourse 1; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 1; day 3
1,931,084	+		PP_1730	0.50	+1.2
1,931,084	+		PP_1730	0.50	-1.3
1,931,085	-		PP_1730	0.50	+1.3
1,931,402	+		PP_1730	0.75	-0.1
1,931,441	-		PP_1730	0.78	-0.6
1,931,570	+		PP_1730	0.88	+0.0
1,931,570	+		PP_1730	0.88	-0.7
1,931,571	-		PP_1730	0.88	+0.2
1,931,571	-		PP_1730	0.88	+1.1
1,931,571	-		PP_1730	0.88	-0.6
1,931,573	+		PP_1730	0.88	-0.0
1,931,574	-		PP_1730	0.88	+2.3
1,931,727	+				-0.9
1,931,728	-				-0.7
1,931,728	-				+0.1
1,931,818	+				+0.6
1,931,818	+				+0.3
1,931,818	+				+0.6
1,931,819	-				-0.8
1,931,864	+				+0.9
1,932,016	+		PP_1731	0.19	-1.7
1,932,134	+		PP_1731	0.37	-0.2
1,932,135	-		PP_1731	0.37	-1.9
1,932,135	-		PP_1731	0.37	-1.6
1,932,205	+		PP_1731	0.48	-1.0
1,932,206	-		PP_1731	0.48	+0.9
1,932,268	+		PP_1731	0.58	-0.3
1,932,268	+		PP_1731	0.58	-0.1
1,932,269	-		PP_1731	0.58	-1.0
1,932,269	-		PP_1731	0.58	-0.3
1,932,551	+				-1.8
1,932,552	-				+1.1
1,932,552	-				+0.0
1,932,552	-				+0.2
1,932,552	-				-0.2
1,932,603	+				-0.7
1,932,612	+				-0.7
1,932,613	-				-0.5
1,932,625	+				-0.8
1,933,042	-		PP_1733	0.12	+1.2
1,933,042	-		PP_1733	0.12	+1.9
1,933,307	+		PP_1733	0.45	+0.1
1,933,357	-		PP_1733	0.51	+2.9
1,933,410	+		PP_1733	0.58	+0.2
1,933,411	-		PP_1733	0.58	+1.9
1,933,503	+		PP_1733	0.69	+1.9
1,933,503	+		PP_1733	0.69	+2.9
1,933,503	+		PP_1733	0.69	+2.9
1,933,504	-		PP_1733	0.69	+0.3
1,933,504	-				+1.3