Strain Fitness in Pseudomonas putida KT2440 around PP_1241

Experiment: Adaptation in M9 media timecourse 1; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 1; day 3
1,418,251	-				+1.0
1,418,434	+				-0.7
1,418,434	+				+3.0
1,418,435	-				+2.0
1,418,513	-				+1.0
1,418,529	-				-0.6
1,418,574	+		PP_1241	0.12	-0.6
1,418,575	-		PP_1241	0.12	-0.9
1,418,575	-		PP_1241	0.12	-0.6
1,418,580	+		PP_1241	0.14	-0.2
1,418,580	+		PP_1241	0.14	-3.2
1,418,580	+		PP_1241	0.14	-2.8
1,418,580	+		PP_1241	0.14	-0.6
1,418,643	-		PP_1241	0.32	-0.3
1,418,744	+		PP_1241	0.60	-0.5
1,418,744	+		PP_1241	0.60	-1.0
1,418,745	-		PP_1241	0.61	-0.4
1,418,894	+				-0.3
1,418,894	+				-0.7
1,418,894	+				-0.1
1,418,955	+				+1.1
1,418,956	-				-0.0
1,418,977	-				+0.6
1,418,989	+				-0.4
1,418,989	+				-0.6
1,418,989	+				+1.0
1,418,989	+				+0.4
1,418,989	+				+0.1
1,418,990	-				-0.5
1,418,990	-				+0.3
1,418,990	-				+0.7
1,418,991	+				-0.3
1,418,991	+				+1.6
1,418,991	+				+0.3
1,418,991	+				-0.3
1,418,992	-				+0.5
1,419,118	-				+3.0
1,419,118	-				+0.0
1,419,127	+				+2.4
1,419,167	+				+0.2
1,419,211	-				-1.3
1,419,300	+		PP_1242	0.22	+1.1
1,419,301	-		PP_1242	0.23	+0.3
1,419,301	-		PP_1242	0.23	+0.0
1,419,366	+		PP_1242	0.47	-0.3
1,419,366	+		PP_1242	0.47	-0.2
1,419,366	+		PP_1242	0.47	-0.6
1,419,459	+		PP_1242	0.81	+0.4
1,419,459	+		PP_1242	0.81	-1.4
1,419,460	-		PP_1242	0.81	-0.4
1,419,460	-		PP_1242	0.81	+0.2
1,419,578	+				-0.2
1,419,579	-				+1.4
1,419,579	-				-1.3
1,419,649	-				-0.6
1,419,674	+				-0.6
1,419,674	+				-0.9
1,419,674	+				-1.7
1,419,675	-				+0.4
1,419,726	-		PP_1244	0.22	-0.3
1,419,824	+		PP_1244	0.48	+0.6
1,419,824	+		PP_1244	0.48	+0.3
1,419,824	+		PP_1244	0.48	-0.1
1,419,824	+		PP_1244	0.48	+0.5
1,419,825	-		PP_1244	0.49	+0.6
1,419,828	+		PP_1244	0.49	+0.1
1,419,828	+		PP_1244	0.49	-0.8
1,419,828	+		PP_1244	0.49	+0.1
1,419,828	+		PP_1244	0.49	-0.3
1,419,828	+		PP_1244	0.49	-0.3