Experiment: Adaptation in M9 media timecourse 1; day 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0807 and PP_0808 are separated by 155 nucleotides PP_0808 and PP_0809 are separated by 456 nucleotides
PP_0807: PP_0807 - DNA-binding transcriptional dual regulator (NO), at 945,812 to 947,368
_0807
PP_0808: PP_0808 - Flavohemoprotein, at 947,524 to 948,702
_0808
PP_0809: PP_0809 - disulfide bond formation protein B, at 949,159 to 949,665
_0809
Position (kb) 947
948
949 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 946.874 kb on - strand, within PP_0807 at 947.129 kb on + strand, within PP_0807 at 947.129 kb on + strand, within PP_0807 at 947.185 kb on + strand, within PP_0807 at 947.290 kb on - strand at 947.564 kb on + strand at 947.565 kb on - strand at 947.565 kb on - strand at 947.565 kb on - strand at 947.609 kb on - strand at 947.609 kb on - strand at 947.630 kb on - strand at 947.713 kb on + strand, within PP_0808 at 947.713 kb on + strand, within PP_0808 at 947.714 kb on - strand, within PP_0808 at 947.948 kb on - strand, within PP_0808 at 947.949 kb on + strand, within PP_0808 at 947.950 kb on - strand, within PP_0808 at 947.950 kb on - strand, within PP_0808 at 947.950 kb on - strand, within PP_0808 at 948.094 kb on + strand, within PP_0808 at 948.094 kb on + strand, within PP_0808 at 948.095 kb on - strand, within PP_0808 at 948.095 kb on - strand, within PP_0808 at 948.095 kb on - strand, within PP_0808 at 948.142 kb on + strand, within PP_0808 at 948.142 kb on + strand, within PP_0808 at 948.142 kb on + strand, within PP_0808 at 948.143 kb on - strand, within PP_0808 at 948.143 kb on - strand, within PP_0808 at 948.220 kb on + strand, within PP_0808 at 948.221 kb on - strand, within PP_0808 at 948.221 kb on - strand, within PP_0808 at 948.249 kb on + strand, within PP_0808 at 948.481 kb on + strand, within PP_0808 at 948.481 kb on + strand, within PP_0808 at 948.481 kb on + strand, within PP_0808 at 948.481 kb on + strand, within PP_0808 at 948.481 kb on + strand, within PP_0808 at 948.481 kb on + strand, within PP_0808 at 948.482 kb on - strand, within PP_0808 at 948.482 kb on - strand, within PP_0808 at 948.482 kb on - strand, within PP_0808 at 948.482 kb on - strand, within PP_0808 at 948.482 kb on - strand, within PP_0808 at 948.482 kb on - strand, within PP_0808 at 948.482 kb on - strand, within PP_0808 at 948.488 kb on - strand, within PP_0808 at 948.488 kb on - strand, within PP_0808 at 948.488 kb on - strand, within PP_0808 at 948.488 kb on - strand, within PP_0808 at 948.586 kb on + strand at 948.586 kb on + strand at 948.587 kb on - strand at 948.587 kb on - strand at 948.587 kb on - strand at 948.705 kb on + strand at 948.705 kb on + strand at 948.705 kb on + strand at 948.706 kb on - strand at 948.706 kb on - strand at 948.750 kb on + strand at 948.750 kb on + strand at 948.751 kb on - strand at 948.751 kb on - strand at 948.785 kb on - strand at 948.796 kb on + strand at 948.814 kb on + strand at 948.815 kb on - strand at 948.822 kb on + strand at 948.822 kb on + strand at 948.822 kb on + strand at 948.823 kb on - strand at 948.823 kb on - strand at 948.823 kb on - strand at 948.823 kb on - strand at 948.823 kb on - strand at 948.824 kb on + strand at 948.824 kb on + strand at 948.825 kb on - strand at 948.825 kb on - strand at 948.825 kb on - strand at 948.863 kb on + strand at 948.863 kb on + strand at 948.863 kb on + strand at 948.863 kb on + strand at 948.863 kb on + strand at 948.864 kb on - strand at 948.864 kb on - strand at 948.865 kb on + strand at 948.865 kb on + strand at 948.865 kb on + strand at 948.865 kb on + strand at 948.866 kb on - strand at 948.866 kb on - strand at 948.866 kb on - strand at 948.866 kb on - strand at 948.866 kb on - strand at 948.867 kb on + strand at 948.867 kb on + strand at 948.867 kb on + strand at 948.867 kb on + strand at 948.867 kb on + strand at 948.867 kb on + strand at 948.867 kb on + strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.869 kb on + strand at 948.869 kb on + strand at 948.870 kb on - strand at 948.907 kb on + strand at 948.907 kb on + strand at 948.908 kb on - strand at 948.908 kb on - strand at 948.918 kb on + strand at 949.102 kb on + strand at 949.102 kb on + strand at 949.139 kb on - strand at 949.249 kb on + strand, within PP_0809 at 949.249 kb on + strand, within PP_0809 at 949.250 kb on - strand, within PP_0809 at 949.250 kb on - strand, within PP_0809 at 949.250 kb on - strand, within PP_0809 at 949.303 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.436 kb on - strand, within PP_0809 at 949.436 kb on - strand, within PP_0809 at 949.436 kb on - strand, within PP_0809 at 949.436 kb on - strand, within PP_0809 at 949.436 kb on - strand, within PP_0809 at 949.437 kb on + strand, within PP_0809 at 949.437 kb on + strand, within PP_0809 at 949.437 kb on + strand, within PP_0809 at 949.437 kb on + strand, within PP_0809 at 949.438 kb on - strand, within PP_0809 at 949.438 kb on - strand, within PP_0809 at 949.438 kb on - strand, within PP_0809 at 949.438 kb on - strand, within PP_0809 at 949.438 kb on - strand, within PP_0809 at 949.438 kb on - strand, within PP_0809 at 949.439 kb on + strand, within PP_0809 at 949.439 kb on + strand, within PP_0809 at 949.439 kb on + strand, within PP_0809 at 949.439 kb on + strand, within PP_0809 at 949.440 kb on - strand, within PP_0809 at 949.440 kb on - strand, within PP_0809 at 949.440 kb on - strand, within PP_0809 at 949.642 kb on + strand at 949.642 kb on + strand at 949.642 kb on + strand at 949.643 kb on - strand at 949.643 kb on - strand at 949.663 kb on + strand at 949.663 kb on + strand at 949.664 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adaptation in M9 media timecourse 1; day 3 remove 946,874 - PP_0807 0.68 -0.4 947,129 + PP_0807 0.85 +0.3 947,129 + PP_0807 0.85 -0.4 947,185 + PP_0807 0.88 +0.2 947,290 - +0.3 947,564 + +0.5 947,565 - +0.2 947,565 - -0.4 947,565 - +0.8 947,609 - -0.1 947,609 - -0.2 947,630 - +0.1 947,713 + PP_0808 0.16 -1.5 947,713 + PP_0808 0.16 +1.0 947,714 - PP_0808 0.16 -0.6 947,948 - PP_0808 0.36 +0.4 947,949 + PP_0808 0.36 +0.4 947,950 - PP_0808 0.36 +0.2 947,950 - PP_0808 0.36 -0.0 947,950 - PP_0808 0.36 +0.0 948,094 + PP_0808 0.48 +0.2 948,094 + PP_0808 0.48 +0.0 948,095 - PP_0808 0.48 +0.5 948,095 - PP_0808 0.48 +1.6 948,095 - PP_0808 0.48 -0.2 948,142 + PP_0808 0.52 +0.0 948,142 + PP_0808 0.52 -0.6 948,142 + PP_0808 0.52 -0.3 948,143 - PP_0808 0.53 +0.5 948,143 - PP_0808 0.53 +1.0 948,220 + PP_0808 0.59 -0.2 948,221 - PP_0808 0.59 +0.4 948,221 - PP_0808 0.59 -0.1 948,249 + PP_0808 0.61 -0.9 948,481 + PP_0808 0.81 +0.1 948,481 + PP_0808 0.81 -0.8 948,481 + PP_0808 0.81 +1.0 948,481 + PP_0808 0.81 +0.3 948,481 + PP_0808 0.81 +0.5 948,481 + PP_0808 0.81 +0.2 948,482 - PP_0808 0.81 +2.2 948,482 - PP_0808 0.81 -0.4 948,482 - PP_0808 0.81 +1.4 948,482 - PP_0808 0.81 +0.2 948,482 - PP_0808 0.81 +0.6 948,482 - PP_0808 0.81 +0.2 948,482 - PP_0808 0.81 +0.2 948,488 - PP_0808 0.82 +0.7 948,488 - PP_0808 0.82 +0.2 948,488 - PP_0808 0.82 -0.5 948,488 - PP_0808 0.82 -1.1 948,586 + -0.3 948,586 + +0.4 948,587 - -0.4 948,587 - -0.4 948,587 - -0.7 948,705 + +0.2 948,705 + -0.3 948,705 + +0.5 948,706 - -0.6 948,706 - +0.4 948,750 + +0.5 948,750 + +0.1 948,751 - +2.0 948,751 - -0.1 948,785 - +0.7 948,796 + +0.2 948,814 + -0.8 948,815 - +1.6 948,822 + +0.5 948,822 + +0.2 948,822 + +0.2 948,823 - +0.4 948,823 - -0.3 948,823 - +0.2 948,823 - -0.2 948,823 - +1.1 948,824 + +2.0 948,824 + -0.4 948,825 - +0.3 948,825 - -0.2 948,825 - -0.2 948,863 + -1.0 948,863 + -0.3 948,863 + +0.2 948,863 + -0.9 948,863 + +0.3 948,864 - -0.4 948,864 - +0.2 948,865 + -1.1 948,865 + +0.8 948,865 + -0.6 948,865 + +0.3 948,866 - +0.4 948,866 - +1.2 948,866 - -0.5 948,866 - +0.0 948,866 - -1.3 948,867 + -0.9 948,867 + +0.8 948,867 + -0.5 948,867 + +0.1 948,867 + -0.0 948,867 + +1.0 948,867 + -0.6 948,868 - -1.5 948,868 - +0.1 948,868 - -0.2 948,868 - +0.9 948,868 - -0.3 948,868 - -0.3 948,868 - -1.6 948,868 - -0.2 948,868 - +0.3 948,869 + -0.5 948,869 + -0.0 948,870 - +0.8 948,907 + -0.1 948,907 + -0.8 948,908 - +1.0 948,908 - -0.3 948,918 + +0.0 949,102 + +0.1 949,102 + -1.1 949,139 - +0.4 949,249 + PP_0809 0.18 -0.0 949,249 + PP_0809 0.18 -1.5 949,250 - PP_0809 0.18 +2.0 949,250 - PP_0809 0.18 -0.7 949,250 - PP_0809 0.18 -0.8 949,303 + PP_0809 0.28 -0.5 949,435 + PP_0809 0.54 -0.8 949,435 + PP_0809 0.54 -1.1 949,435 + PP_0809 0.54 +0.4 949,435 + PP_0809 0.54 -0.9 949,435 + PP_0809 0.54 -0.5 949,435 + PP_0809 0.54 -0.8 949,435 + PP_0809 0.54 -0.6 949,435 + PP_0809 0.54 -0.6 949,435 + PP_0809 0.54 +0.4 949,435 + PP_0809 0.54 -0.7 949,436 - PP_0809 0.55 -1.6 949,436 - PP_0809 0.55 -0.8 949,436 - PP_0809 0.55 -0.6 949,436 - PP_0809 0.55 -2.3 949,436 - PP_0809 0.55 -0.8 949,437 + PP_0809 0.55 -1.2 949,437 + PP_0809 0.55 -1.7 949,437 + PP_0809 0.55 -1.7 949,437 + PP_0809 0.55 +0.6 949,438 - PP_0809 0.55 -1.6 949,438 - PP_0809 0.55 +0.4 949,438 - PP_0809 0.55 +0.2 949,438 - PP_0809 0.55 +1.4 949,438 - PP_0809 0.55 -0.4 949,438 - PP_0809 0.55 -0.8 949,439 + PP_0809 0.55 -1.4 949,439 + PP_0809 0.55 -3.5 949,439 + PP_0809 0.55 +0.7 949,439 + PP_0809 0.55 -0.7 949,440 - PP_0809 0.55 -0.2 949,440 - PP_0809 0.55 +0.0 949,440 - PP_0809 0.55 +0.1 949,642 + -0.0 949,642 + +0.1 949,642 + +0.7 949,643 - +0.3 949,643 - -0.2 949,663 + -0.2 949,663 + -0.8 949,664 - +0.0
Or see this region's nucleotide sequence