Experiment: Adaptation in M9 media timecourse 1; day 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0298 and PP_0299 are separated by 119 nucleotides PP_0299 and PP_0300 are separated by 131 nucleotides
PP_0298: PP_0298 - AraC-family transcriptional regulator, at 358,534 to 359,640
_0298
PP_0299: PP_0299 - conserved protein of unknown function, at 359,760 to 360,218
_0299
PP_0300: PP_0300 - putative metallopeptidase, at 360,350 to 361,936
_0300
Position (kb) 359
360
361 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 359.145 kb on + strand, within PP_0298 at 359.281 kb on + strand, within PP_0298 at 359.282 kb on - strand, within PP_0298 at 359.282 kb on - strand, within PP_0298 at 359.282 kb on - strand, within PP_0298 at 359.282 kb on - strand, within PP_0298 at 359.282 kb on - strand, within PP_0298 at 359.282 kb on - strand, within PP_0298 at 359.282 kb on - strand, within PP_0298 at 359.350 kb on + strand, within PP_0298 at 359.351 kb on - strand, within PP_0298 at 359.353 kb on + strand, within PP_0298 at 359.354 kb on - strand, within PP_0298 at 359.354 kb on - strand, within PP_0298 at 359.354 kb on - strand, within PP_0298 at 359.467 kb on + strand, within PP_0298 at 359.476 kb on + strand, within PP_0298 at 359.630 kb on + strand at 359.631 kb on - strand at 359.631 kb on - strand at 359.631 kb on - strand at 359.631 kb on - strand at 359.631 kb on - strand at 359.820 kb on + strand, within PP_0299 at 359.851 kb on + strand, within PP_0299 at 359.851 kb on + strand, within PP_0299 at 359.851 kb on + strand, within PP_0299 at 359.851 kb on + strand, within PP_0299 at 359.851 kb on + strand, within PP_0299 at 359.852 kb on - strand, within PP_0299 at 359.852 kb on - strand, within PP_0299 at 359.852 kb on - strand, within PP_0299 at 359.852 kb on - strand, within PP_0299 at 359.852 kb on - strand, within PP_0299 at 359.852 kb on - strand, within PP_0299 at 359.951 kb on + strand, within PP_0299 at 360.034 kb on - strand, within PP_0299 at 360.040 kb on - strand, within PP_0299 at 360.060 kb on + strand, within PP_0299 at 360.126 kb on + strand, within PP_0299 at 360.147 kb on + strand, within PP_0299 at 360.191 kb on + strand at 360.192 kb on - strand at 360.192 kb on - strand at 360.290 kb on - strand at 360.290 kb on - strand at 360.293 kb on + strand at 360.330 kb on - strand at 360.387 kb on + strand at 360.430 kb on + strand at 360.458 kb on - strand at 360.574 kb on - strand, within PP_0300 at 360.616 kb on - strand, within PP_0300 at 360.691 kb on - strand, within PP_0300 at 360.721 kb on + strand, within PP_0300 at 360.722 kb on - strand, within PP_0300 at 360.732 kb on - strand at 360.732 kb on - strand, within PP_0300 at 360.753 kb on - strand, within PP_0300 at 360.927 kb on + strand, within PP_0300 at 360.928 kb on - strand, within PP_0300 at 360.982 kb on + strand, within PP_0300 at 360.983 kb on - strand, within PP_0300 at 360.983 kb on - strand, within PP_0300 at 360.994 kb on - strand, within PP_0300 at 360.994 kb on - strand, within PP_0300 at 361.001 kb on - strand, within PP_0300 at 361.034 kb on + strand, within PP_0300 at 361.060 kb on - strand, within PP_0300 at 361.076 kb on + strand, within PP_0300 at 361.077 kb on - strand, within PP_0300 at 361.104 kb on + strand, within PP_0300 at 361.105 kb on - strand, within PP_0300 at 361.178 kb on - strand, within PP_0300
Per-strain Table
Position Strand Gene LocusTag Fraction Adaptation in M9 media timecourse 1; day 3 remove 359,145 + PP_0298 0.55 +1.4 359,281 + PP_0298 0.67 -0.3 359,282 - PP_0298 0.68 -1.0 359,282 - PP_0298 0.68 -0.1 359,282 - PP_0298 0.68 +0.1 359,282 - PP_0298 0.68 +0.1 359,282 - PP_0298 0.68 -0.2 359,282 - PP_0298 0.68 -0.9 359,282 - PP_0298 0.68 +0.2 359,350 + PP_0298 0.74 +0.7 359,351 - PP_0298 0.74 -0.6 359,353 + PP_0298 0.74 +0.1 359,354 - PP_0298 0.74 +0.5 359,354 - PP_0298 0.74 -0.4 359,354 - PP_0298 0.74 -0.5 359,467 + PP_0298 0.84 -0.5 359,476 + PP_0298 0.85 -1.1 359,630 + +1.4 359,631 - -0.2 359,631 - -0.2 359,631 - +0.4 359,631 - -0.0 359,631 - -0.1 359,820 + PP_0299 0.13 -0.2 359,851 + PP_0299 0.20 +1.3 359,851 + PP_0299 0.20 -0.5 359,851 + PP_0299 0.20 -1.5 359,851 + PP_0299 0.20 -0.2 359,851 + PP_0299 0.20 -0.2 359,852 - PP_0299 0.20 -1.4 359,852 - PP_0299 0.20 -0.7 359,852 - PP_0299 0.20 -0.4 359,852 - PP_0299 0.20 -0.9 359,852 - PP_0299 0.20 +0.6 359,852 - PP_0299 0.20 +0.1 359,951 + PP_0299 0.42 +0.1 360,034 - PP_0299 0.60 +0.0 360,040 - PP_0299 0.61 +1.1 360,060 + PP_0299 0.65 -2.0 360,126 + PP_0299 0.80 -0.6 360,147 + PP_0299 0.84 +1.9 360,191 + -0.3 360,192 - -0.2 360,192 - -0.4 360,290 - -0.6 360,290 - -0.8 360,293 + +0.0 360,330 - -2.5 360,387 + +0.4 360,430 + -1.4 360,458 - -1.1 360,574 - PP_0300 0.14 +2.9 360,616 - PP_0300 0.17 +0.0 360,691 - PP_0300 0.21 -1.0 360,721 + PP_0300 0.23 +0.4 360,722 - PP_0300 0.23 +1.1 360,732 - +1.9 360,732 - PP_0300 0.24 +0.2 360,753 - PP_0300 0.25 -0.5 360,927 + PP_0300 0.36 +0.2 360,928 - PP_0300 0.36 -0.7 360,982 + PP_0300 0.40 -1.5 360,983 - PP_0300 0.40 -0.7 360,983 - PP_0300 0.40 +2.9 360,994 - PP_0300 0.41 +0.6 360,994 - PP_0300 0.41 +0.2 361,001 - PP_0300 0.41 +1.4 361,034 + PP_0300 0.43 -0.2 361,060 - PP_0300 0.45 +0.9 361,076 + PP_0300 0.46 -1.0 361,077 - PP_0300 0.46 +0.3 361,104 + PP_0300 0.48 -0.3 361,105 - PP_0300 0.48 -0.2 361,178 - PP_0300 0.52 +0.3
Or see this region's nucleotide sequence