Strain Fitness in Agrobacterium fabrum C58 around Atu6197

Experiment: R2A with Vogels_fungal_media 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6194 and Atu6195 overlap by 11 nucleotidesAtu6195 and Atu6196 are separated by 16 nucleotidesAtu6196 and Atu6197 are separated by 41 nucleotides Atu6194: Atu6194 - conserved hypothetical protein, at 211,970 to 212,497 Atu6194 Atu6195: Atu6195 - conserved hypothetical protein, at 212,487 to 212,684 Atu6195 Atu6196: Atu6196 - arabinose phosphate phosphatase, at 212,701 to 213,429 Atu6196 Atu6197: Atu6197 - agrocinopine phosphodiesterase, at 213,471 to 213,755 Atu6197 Position (kb) 213 214Strain fitness (log2 ratio) -2 -1 0 1 2at 212.477 kb on - strandat 212.485 kb on - strandat 212.492 kb on - strandat 212.499 kb on + strandat 212.571 kb on + strand, within Atu6195at 212.649 kb on + strand, within Atu6195at 212.649 kb on - strand, within Atu6195at 212.693 kb on + strandat 212.701 kb on - strandat 212.719 kb on - strandat 212.719 kb on - strandat 212.740 kb on - strandat 212.771 kb on + strandat 212.776 kb on + strand, within Atu6196at 212.790 kb on + strand, within Atu6196at 212.813 kb on + strand, within Atu6196at 212.821 kb on - strand, within Atu6196at 212.862 kb on - strand, within Atu6196at 212.866 kb on + strand, within Atu6196at 212.883 kb on + strand, within Atu6196at 212.883 kb on + strand, within Atu6196at 212.905 kb on - strand, within Atu6196at 212.910 kb on - strand, within Atu6196at 212.937 kb on - strand, within Atu6196at 212.991 kb on - strand, within Atu6196at 212.991 kb on - strand, within Atu6196at 213.049 kb on + strand, within Atu6196at 213.049 kb on - strand, within Atu6196at 213.049 kb on - strand, within Atu6196at 213.049 kb on - strand, within Atu6196at 213.049 kb on - strand, within Atu6196at 213.049 kb on - strand, within Atu6196at 213.049 kb on - strand, within Atu6196at 213.060 kb on - strand, within Atu6196at 213.119 kb on + strand, within Atu6196at 213.133 kb on + strand, within Atu6196at 213.135 kb on - strand, within Atu6196at 213.138 kb on + strand, within Atu6196at 213.140 kb on - strand, within Atu6196at 213.160 kb on - strand, within Atu6196at 213.160 kb on - strand, within Atu6196at 213.207 kb on + strand, within Atu6196at 213.214 kb on - strand, within Atu6196at 213.287 kb on - strand, within Atu6196at 213.324 kb on + strand, within Atu6196at 213.346 kb on - strand, within Atu6196at 213.404 kb on + strandat 213.435 kb on + strandat 213.443 kb on - strandat 213.464 kb on + strandat 213.464 kb on + strandat 213.487 kb on + strandat 213.496 kb on + strandat 213.502 kb on - strand, within Atu6197at 213.514 kb on - strand, within Atu6197at 213.514 kb on - strand, within Atu6197at 213.553 kb on + strand, within Atu6197at 213.571 kb on - strand, within Atu6197at 213.617 kb on + strand, within Atu6197at 213.620 kb on - strand, within Atu6197at 213.628 kb on - strand, within Atu6197at 213.670 kb on - strand, within Atu6197at 213.680 kb on + strand, within Atu6197at 213.686 kb on - strand, within Atu6197at 213.733 kb on + strandat 213.743 kb on + strandat 213.793 kb on - strandat 213.804 kb on + strandat 213.817 kb on - strandat 213.833 kb on - strandat 213.884 kb on - strandat 213.918 kb on - strandat 213.918 kb on - strandat 213.977 kb on + strandat 213.985 kb on - strandat 213.998 kb on + strandat 214.006 kb on + strandat 214.014 kb on - strandat 214.044 kb on - strandat 214.156 kb on + strandat 214.159 kb on - strandat 214.164 kb on + strandat 214.164 kb on - strandat 214.164 kb on - strandat 214.166 kb on + strandat 214.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X
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212,477 - +0.1
212,485 - -0.2
212,492 - +2.7
212,499 + -0.3
212,571 + Atu6195 0.42 +0.7
212,649 + Atu6195 0.82 +0.1
212,649 - Atu6195 0.82 +0.4
212,693 + +0.1
212,701 - +0.1
212,719 - +0.5
212,719 - -0.2
212,740 - +1.7
212,771 + -0.4
212,776 + Atu6196 0.10 +0.2
212,790 + Atu6196 0.12 +0.8
212,813 + Atu6196 0.15 +0.3
212,821 - Atu6196 0.16 -0.3
212,862 - Atu6196 0.22 +2.7
212,866 + Atu6196 0.23 +0.1
212,883 + Atu6196 0.25 +0.1
212,883 + Atu6196 0.25 -0.2
212,905 - Atu6196 0.28 -0.0
212,910 - Atu6196 0.29 -0.0
212,937 - Atu6196 0.32 +1.7
212,991 - Atu6196 0.40 -0.3
212,991 - Atu6196 0.40 -0.3
213,049 + Atu6196 0.48 -0.7
213,049 - Atu6196 0.48 -0.2
213,049 - Atu6196 0.48 -1.5
213,049 - Atu6196 0.48 +0.3
213,049 - Atu6196 0.48 +1.2
213,049 - Atu6196 0.48 -1.2
213,049 - Atu6196 0.48 -2.6
213,060 - Atu6196 0.49 -0.8
213,119 + Atu6196 0.57 -0.2
213,133 + Atu6196 0.59 +0.5
213,135 - Atu6196 0.60 -0.1
213,138 + Atu6196 0.60 +0.2
213,140 - Atu6196 0.60 +0.9
213,160 - Atu6196 0.63 +0.5
213,160 - Atu6196 0.63 -0.3
213,207 + Atu6196 0.69 -0.1
213,214 - Atu6196 0.70 -1.1
213,287 - Atu6196 0.80 -1.0
213,324 + Atu6196 0.85 +0.0
213,346 - Atu6196 0.88 +0.3
213,404 + +1.2
213,435 + -0.8
213,443 - +0.7
213,464 + +1.7
213,464 + +0.1
213,487 + +0.5
213,496 + +0.7
213,502 - Atu6197 0.11 +0.7
213,514 - Atu6197 0.15 -0.5
213,514 - Atu6197 0.15 -1.4
213,553 + Atu6197 0.29 -1.3
213,571 - Atu6197 0.35 +0.7
213,617 + Atu6197 0.51 +1.7
213,620 - Atu6197 0.52 -0.7
213,628 - Atu6197 0.55 -0.6
213,670 - Atu6197 0.70 +0.2
213,680 + Atu6197 0.73 -0.5
213,686 - Atu6197 0.75 -0.7
213,733 + +0.3
213,743 + +0.1
213,793 - +0.8
213,804 + +1.4
213,817 - -1.8
213,833 - -0.8
213,884 - +2.4
213,918 - -0.2
213,918 - +0.8
213,977 + -1.2
213,985 - +0.2
213,998 + +0.9
214,006 + -1.3
214,014 - +0.1
214,044 - -0.8
214,156 + +1.2
214,159 - +1.2
214,164 + +0.1
214,164 - +0.1
214,164 - -1.0
214,166 + +0.3
214,172 - +1.7

Or see this region's nucleotide sequence