Strain Fitness in Pseudomonas putida KT2440 around PP_3496

Experiment: Adaptation in M9 media timecourse 1; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 1; day 2
3,964,220	-		PP_3494	0.37	-0.7
3,964,220	-		PP_3494	0.37	+0.5
3,964,225	+		PP_3494	0.39	+0.6
3,964,225	+		PP_3494	0.39	+0.1
3,964,226	-		PP_3494	0.39	+1.7
3,964,315	+		PP_3494	0.74	+0.5
3,964,315	+		PP_3494	0.74	-2.3
3,964,315	+		PP_3494	0.74	-1.2
3,964,315	+		PP_3494	0.74	-0.4
3,964,315	+		PP_3494	0.74	-0.3
3,964,315	+		PP_3494	0.74	+0.1
3,964,316	-		PP_3494	0.74	+0.0
3,964,316	-		PP_3494	0.74	+0.6
3,964,316	-		PP_3494	0.74	+0.3
3,964,316	-		PP_3494	0.74	+0.3
3,964,563	+		PP_3495	0.26	+0.5
3,964,564	-		PP_3495	0.26	-0.0
3,964,581	+		PP_3495	0.28	-0.5
3,964,581	+		PP_3495	0.28	-0.2
3,964,581	+		PP_3495	0.28	-0.1
3,964,582	-		PP_3495	0.28	-0.6
3,964,582	-		PP_3495	0.28	+0.2
3,964,582	-		PP_3495	0.28	+0.1
3,964,582	-		PP_3495	0.28	-0.2
3,964,813	+		PP_3495	0.62	+0.1
3,964,862	+		PP_3495	0.69	-0.1
3,964,952	+		PP_3495	0.82	+0.3
3,965,027	+				+0.4
3,965,027	+				-0.3
3,965,028	-				-0.8
3,965,028	-				+0.9
3,965,028	-				-0.3
3,965,028	-				+0.5
3,965,028	-				+0.3
3,965,028	-				-0.3
3,965,080	+				-1.4
3,965,080	+				-0.3
3,965,081	-				-0.7
3,965,235	+				+0.4
3,965,235	+				-0.9
3,965,236	-		PP_3496	0.10	-0.7
3,965,236	-		PP_3496	0.10	-1.0
3,965,442	+		PP_3496	0.62	-0.7
3,965,442	+		PP_3496	0.62	+0.1
3,965,442	+		PP_3496	0.62	+0.4
3,965,443	-		PP_3496	0.62	-1.6
3,965,443	-		PP_3496	0.62	-1.1
3,965,485	-		PP_3496	0.72	-0.4
3,965,681	+				-0.3
3,965,765	+				-0.1
3,965,778	+				+0.9
3,965,779	-				+0.9
3,965,800	-				+0.4
3,965,800	-				-0.3
3,965,802	-				+0.7
3,965,901	+				+1.1
3,965,901	+				-0.7
3,965,901	+				+0.2
3,965,902	-				-0.1
3,965,902	-				-0.4
3,965,902	-				-0.0
3,965,902	-				-1.8
3,965,902	-				+0.0
3,965,902	-				-0.4
3,965,988	+				+0.0
3,965,989	-				-1.4
3,965,989	-				-0.3
3,966,072	+		PP_3497	0.13	+0.0
3,966,072	+		PP_3497	0.13	+0.1
3,966,073	-		PP_3497	0.13	-2.0
3,966,073	-		PP_3497	0.13	-0.4
3,966,540	+		PP_3497	0.37	+1.3
3,966,541	-		PP_3497	0.37	-0.5
3,966,555	+		PP_3497	0.37	+0.2
3,966,555	+		PP_3497	0.37	+0.0
3,966,556	-		PP_3497	0.37	-0.0
3,966,556	-		PP_3497	0.37	+0.2