Strain Fitness in Pseudomonas putida KT2440 around PP_2581

Experiment: Adaptation in M9 media timecourse 1; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 1; day 2
2,947,128	-		PP_2579	0.78	-0.8
2,947,244	+		PP_2579	0.84	-0.0
2,947,244	+		PP_2579	0.84	-0.1
2,947,244	+		PP_2579	0.84	+0.1
2,947,256	+		PP_2579	0.85	-0.0
2,947,257	-		PP_2579	0.85	-1.0
2,947,442	+				-0.3
2,947,442	+				+0.6
2,947,509	+				-0.1
2,947,510	-				-0.7
2,947,510	-				+0.3
2,947,510	-				-0.6
2,947,510	-				-0.8
2,947,523	+				+0.7
2,947,523	+				-0.9
2,947,523	+				-0.2
2,947,524	-				+0.5
2,947,524	-				+0.2
2,947,524	-				+0.9
2,947,524	-				-0.2
2,947,524	-				+0.0
2,947,584	-				-0.3
2,947,642	-				-0.2
2,947,642	-				+0.0
2,947,650	+				+0.4
2,947,714	-				-1.4
2,947,744	+				+1.8
2,947,744	+				+0.6
2,947,762	-		PP_2580	0.19	+0.3
2,947,762	-		PP_2580	0.19	-0.6
2,947,817	+		PP_2580	0.54	-0.2
2,947,817	+		PP_2580	0.54	-0.2
2,947,927	+				-0.3
2,947,927	+				+1.0
2,947,930	+				+0.1
2,947,930	+				+0.4
2,947,930	+				+0.2
2,947,930	+				-1.1
2,947,931	-				-0.3
2,948,284	-		PP_2581	0.48	-1.0
2,948,388	+		PP_2581	0.78	-0.5
2,948,431	-				-0.5
2,948,506	+				+0.1
2,948,507	-				+1.0
2,948,557	+		PP_2582	0.11	-0.5
2,948,745	-		PP_2582	0.43	+0.2
2,948,897	+		PP_2582	0.69	-0.8
2,948,897	+		PP_2582	0.69	+0.4
2,948,898	-		PP_2582	0.69	-0.7
2,948,952	-		PP_2582	0.78	-0.1
2,949,070	+				-0.5
2,949,100	-				+0.6
2,949,100	-				-0.6
2,949,203	+				+0.2
2,949,204	-				-0.3
2,949,204	-				+0.2
2,949,221	+				-0.0
2,949,221	+				+0.4
2,949,222	-				+0.1
2,949,236	+		PP_2583	0.11	+0.1
2,949,237	-		PP_2583	0.11	-0.4
2,949,295	+		PP_2583	0.21	-0.3
2,949,296	-		PP_2583	0.22	-0.1
2,949,296	-		PP_2583	0.22	+0.2
2,949,316	+		PP_2583	0.25	-0.0
2,949,317	-		PP_2583	0.25	+0.0
2,949,361	-		PP_2583	0.33	-0.2