Strain Fitness in Pseudomonas putida KT2440 around PP_1788

Experiment: Adaptation in M9 media timecourse 1; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 1; day 2
2,003,672	-		PP_1787	0.17	-1.0
2,003,770	+		PP_1787	0.27	-1.4
2,003,892	+		PP_1787	0.39	-0.2
2,004,070	-		PP_1787	0.56	+0.5
2,004,113	-		PP_1787	0.61	-0.5
2,004,139	+		PP_1787	0.63	-0.0
2,004,255	-		PP_1787	0.75	-1.6
2,004,335	+		PP_1787	0.83	-1.0
2,004,527	+				-0.6
2,004,822	+		PP_1788	0.15	+0.3
2,004,860	-		PP_1788	0.19	-1.3
2,005,183	-		PP_1788	0.48	-1.1
2,005,420	-		PP_1788	0.70	-1.5
2,005,515	-		PP_1788	0.79	-0.4
2,005,742	+				+0.4
2,005,924	-				+0.6
2,006,355	+		PP_1789	0.54	-0.3
2,006,368	-		PP_1789	0.56	+0.8
2,006,368	-		PP_1789	0.56	-0.1
2,006,369	+		PP_1789	0.56	+0.2
2,006,369	+		PP_1789	0.56	-0.3
2,006,407	+		PP_1789	0.62	+0.0
2,006,427	+		PP_1789	0.64	+0.1
2,006,457	+		PP_1789	0.69	-0.1
2,006,569	+		PP_1789	0.85	+0.5
2,006,591	+		PP_1789	0.88	+0.3