Strain Fitness in Pseudomonas putida KT2440 around PP_1774

Experiment: Adaptation in M9 media timecourse 1; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 1; day 2
1,981,183	-				-0.5
1,981,221	-				+0.4
1,981,221	-				-0.0
1,981,224	+				-0.2
1,981,225	-				+0.1
1,981,225	-				-0.1
1,981,231	+				-0.5
1,981,271	+				-0.4
1,981,272	-				+1.1
1,981,360	+				+0.1
1,981,387	+				+0.3
1,981,387	+				+0.6
1,981,387	+				+0.8
1,981,388	-				+1.1
1,981,388	-				+1.5
1,981,726	+		PP_1774	0.30	-0.1
1,981,727	-		PP_1774	0.30	-0.5
1,981,727	-		PP_1774	0.30	-1.0
1,981,945	-				-0.3
1,981,945	-				+0.4
1,981,963	+				+0.6
1,981,963	+				-1.2
1,981,964	-				+1.0
1,981,964	-				+0.6
1,981,964	-				-0.6
1,981,964	-				-1.0
1,981,966	+				-0.6
1,981,967	-				-0.7
1,981,982	+				-0.1
1,981,982	+				+0.7
1,981,983	-				+0.7
1,981,983	-				+0.9
1,981,983	-				+0.1
1,981,983	-				-0.7
1,982,007	+				+0.4
1,982,008	-				-0.5
1,982,008	-				+0.0
1,982,008	-				-0.7
1,982,010	+				+0.3
1,982,011	-				+0.7
1,982,011	-				-0.8
1,982,052	+				+0.4
1,982,304	-		PP_1775	0.18	-0.3
1,982,359	-		PP_1775	0.22	+0.3
1,982,359	-		PP_1775	0.22	+0.7
1,982,401	-		PP_1775	0.25	+0.5
1,982,423	+		PP_1775	0.26	-0.5
1,982,424	-		PP_1775	0.26	-0.6
1,982,487	-		PP_1775	0.31	+0.9
1,982,526	+		PP_1775	0.33	+0.5
1,982,527	-		PP_1775	0.33	+0.2
1,982,527	-		PP_1775	0.33	+0.6
1,982,540	+		PP_1775	0.34	+0.7
1,982,569	-		PP_1775	0.36	-0.4
1,982,569	-		PP_1775	0.36	+0.1
1,982,664	+		PP_1775	0.43	-1.1
1,982,796	+		PP_1775	0.52	+0.2