Strain Fitness in Pseudomonas putida KT2440 around PP_1598

Experiment: Adaptation in M9 media timecourse 1; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 1; day 2
1,791,370	-				-0.7
1,791,370	-				-1.2
1,791,370	-				-0.5
1,791,559	-		PP_1598	0.15	-0.1
1,791,644	+		PP_1598	0.22	-0.5
1,791,645	-		PP_1598	0.22	-1.8
1,791,645	-		PP_1598	0.22	-1.6
1,791,645	-		PP_1598	0.22	-1.6
1,791,689	+		PP_1598	0.25	+1.5
1,791,884	+		PP_1598	0.39	-0.3
1,792,135	+		PP_1598	0.58	+0.5
1,792,257	+		PP_1598	0.67	+0.5
1,792,258	-		PP_1598	0.67	+1.5
1,792,451	+		PP_1598	0.81	-0.3
1,792,519	+		PP_1598	0.86	-1.3
1,792,519	+		PP_1598	0.86	-1.4
1,792,519	+				+2.5
1,792,535	+		PP_1598	0.87	+0.7
1,792,555	+		PP_1598	0.89	+1.5
1,792,581	+				+1.2
1,792,663	+				-0.8
1,792,705	+				+0.8
1,792,707	+				+0.5