Strain Fitness in Pseudomonas putida KT2440 around PP_1544

Experiment: Adaptation in M9 media timecourse 1; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 1; day 2
1,745,093	+				-0.6
1,745,131	+				-0.3
1,745,279	+		PP_1543	0.12	-0.5
1,745,280	-		PP_1543	0.12	+0.5
1,745,341	+		PP_1543	0.23	-0.6
1,745,555	+		PP_1543	0.62	-0.3
1,745,555	+		PP_1543	0.62	+0.3
1,745,556	-		PP_1543	0.62	+0.4
1,745,556	-		PP_1543	0.62	-0.4
1,745,556	-		PP_1543	0.62	-0.6
1,745,556	-		PP_1543	0.62	+1.2
1,745,556	-		PP_1543	0.62	+0.3
1,745,607	+		PP_1543	0.72	-1.1
1,745,607	+		PP_1543	0.72	+0.5
1,745,608	-		PP_1543	0.72	-0.3
1,745,619	-		PP_1543	0.74	+0.8
1,745,619	-		PP_1543	0.74	-0.1
1,745,766	+				-0.7
1,745,767	-				-1.3
1,745,855	+				+0.3
1,745,856	-				+0.0
1,745,869	+				-0.0
1,745,881	+				+0.2
1,745,881	+				-0.1
1,745,881	+				+0.4
1,745,881	+				-0.5
1,745,881	+				-0.5
1,745,881	+				-0.9
1,745,881	+				-0.2
1,745,881	+				-0.9
1,745,881	+				+0.7
1,745,881	+				+0.8
1,745,882	-				-0.6
1,745,882	-				-0.7
1,745,882	-				-0.6
1,745,882	-				+0.6
1,745,885	+				+0.5
1,745,885	+				-0.7
1,745,885	+				+0.3
1,745,885	+				-0.2
1,745,885	+				-0.5
1,745,885	+				+0.9
1,745,885	+				-0.1
1,745,885	+				-0.7
1,745,886	-				+0.1
1,745,886	-				+1.0
1,745,886	-				-0.1
1,745,886	-				-1.0
1,745,886	-				+0.5
1,745,886	-				-0.3
1,745,896	-				+0.4
1,745,915	+				+0.3
1,745,915	+				+1.1
1,745,915	+				+1.0
1,745,916	-				-0.2
1,745,937	+				+0.2
1,745,937	+				+0.3
1,745,937	+				+0.2
1,745,938	-				+0.3
1,745,938	-				+0.7
1,745,938	-				-1.6
1,745,938	-				-0.5
1,745,938	-				+0.4
1,745,981	+				+0.3
1,745,981	+				-0.8
1,745,981	+				-0.2
1,745,981	+				-0.2
1,745,982	-				-0.1
1,745,982	-				+1.7
1,745,982	-				-0.4
1,745,982	-				-0.2
1,745,985	+				+0.2
1,745,986	-				+0.6
1,746,100	-				-0.4
1,746,117	+				-0.5
1,746,118	-		PP_1544	0.10	-0.9
1,746,191	-		PP_1544	0.29	+0.1
1,746,202	+		PP_1544	0.32	+0.4
1,746,206	+		PP_1544	0.33	-1.0
1,746,207	-		PP_1544	0.33	+0.1
1,746,207	-		PP_1544	0.33	-0.7
1,746,619	+		PP_1545	0.16	+0.0
1,746,619	+		PP_1545	0.16	-2.5
1,746,620	-		PP_1545	0.16	+0.1
1,746,696	+		PP_1545	0.32	+0.4
1,746,697	-		PP_1545	0.33	+0.2
1,746,697	-		PP_1545	0.33	+0.5
1,746,731	+		PP_1545	0.40	-0.1
1,746,732	-		PP_1545	0.40	-0.9
1,746,806	+		PP_1545	0.56	+0.5
1,746,806	+		PP_1545	0.56	-1.6
1,746,807	-		PP_1545	0.57	-0.8
1,746,807	-		PP_1545	0.57	-0.3
1,746,847	+		PP_1545	0.65	+0.2
1,746,847	+		PP_1545	0.65	-0.1
1,746,848	-		PP_1545	0.66	+1.7
1,746,848	-		PP_1545	0.66	+0.0
1,746,879	+		PP_1545	0.72	+4.1
1,746,880	-		PP_1545	0.73	-1.2
1,746,880	-		PP_1545	0.73	+1.3
1,746,880	-		PP_1545	0.73	+0.3
1,746,880	-		PP_1545	0.73	-0.1
1,747,073	-		PP_1546	0.26	-0.5
1,747,073	-		PP_1546	0.26	-0.2
1,747,078	+		PP_1546	0.28	-1.0
1,747,150	+		PP_1546	0.55	+0.7
1,747,170	+		PP_1546	0.62	+0.8
1,747,224	+		PP_1546	0.82	-0.1
1,747,224	+		PP_1546	0.82	-0.6
1,747,225	-		PP_1546	0.83	+0.6
1,747,300	+				-1.0
1,747,456	+		PP_5473	0.76	-0.3